Hg_chrom5_TN10mRNA_11142
Organism: Heterodera glycines Gene Locus: chr5:12301610-12304830 Feature type: polypeptideProtein Sequence
Length: 691
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.06 | 0.808 | 0.789 | 0.549 | 1.447 | 1.039 | 0.879 | 1.23 | 0.675 | 0.958 | 1.206 | 1.107 | 1.246 | 0.974 | 1.861 | 1.137 | 0.996 | 0.439 | 1.002 | 0.596 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10501
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.475
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RHRR,KQRKR,REMKRRR,RRRMYKILKAGRKEKSR,KRKLQQKAKATTTKKRAQR,RKLQQKAKATTTKKRAQRR
|
30-50
|
0.994
|
39-68
|
1.000
|
— | — |
0.000
|
— | — |
0.518
|
0.169
|
0.088
|
0.363
|
0.097
|
0.034
|
0.075
|
0.037
|
0.082
|
0.176
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004256
|
2.000
|
1.000
|
Hsc_gene_10774.t1
|
Hsc_gene_10773.t1
|
— | — |
KAF7636036.1 Elp3 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-385;671-691
|
1.000
|
386-670
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
77853.650
|
10.095
|
36.500
|
32.562
|
10.275
|
54.124
|
45.876
|
19.537
|
13.025
|
47.902
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
76.500
|
114.874
|
78.011
|
189.297
|
152.806
|
51.236
|
99.122
|
63.111
|
32.623
|
29.547
|
30.865
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.790
|
0.583
|
1.389
|
-0.339
|
-1.562
|
0.963
|
— |
0.797
|
— | — | — | — | — |
No JSON data available for plots.