Hg_chrom5_TN10mRNA_11143
Organism: Heterodera glycines Gene Locus: chr5:12304962-12306409 Feature type: polypeptideProtein Sequence
Length: 319
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.911 | 1.094 | 0.912 | 0.865 | 0.993 | 1.366 | 0.485 | 1.411 | 1.254 | 1.652 | 1.187 | 1.475 | 1.567 | 1.025 | 1.088 | 0.672 | 0.668 | 0.712 | 0.723 | 0.83 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10502
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.691
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion|endoplasmic_reticulum
|
— |
KGKKKAKGG,RRRRRMDTTVRAIRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.259
|
0.715
|
0.265
|
0.276
|
0.658
|
0.128
|
0.205
|
0.439
|
0.107
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004257
|
2.000
|
1.000
|
Hsc_gene_18828.t1
|
Hsc_gene_18828.t1
|
— |
O45503.1 Metaxin-1 homolog [Caenorhabditis elegans]
|
KAF7636037.1 GST C-terminal domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0001401
|
GO:0005575_0.929|GO:0110165_0.922|GO:0005622_0.875|GO:0016020_0.872|GO:0043226_0.832|GO:0043229_0.827|GO:0043227_0.793|GO:0005737_0.789|GO:0043231_0.781|GO:0008150_0.622|GO:0009987_0.582|GO:0005739_0.571|GO:0031090_0.524
|
IPR019564+19-142+|IPR033468+163-226+|IPR036282+161-229+|IPR050931+1-263+
|
— |
PF10568+19-142+Outer_mitochondrial_membrane_transport_complex_protein|PF17171+163-226+Glutathione_S-transferase,_C-terminal_domain
|
— |
PTHR12289+1-263+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
318-319
|
1.000
|
1-317
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
36574.510
|
8.814
|
11.500
|
26.959
|
12.226
|
45.768
|
54.232
|
15.987
|
10.972
|
42.947
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
113.390
|
132.779
|
78.232
|
160.197
|
142.076
|
98.298
|
166.362
|
142.070
|
98.696
|
77.053
|
86.329
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.992
|
— |
1.141
|
— |
-0.517
|
0.769
|
0.427
|
0.370
|
— | — | — |
5.598
|
— |
No JSON data available for plots.