Hg_chrom5_TN10mRNA_11144
Organism: Heterodera glycines Gene Locus: chr5:12306398-12308769 Feature type: polypeptideProtein Sequence
Length: 186
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.75 | 1.625 | 0.684 | 0.927 | 1.075 | 0.689 | 0.832 | 1.613 | 1.434 | 0.799 | 1.059 | 1.898 | 1.344 | 0.931 | 0.878 | 0.922 | 0.793 | 1.059 | 1.241 | 1.265 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10503
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKFALKILRDIPKAKRE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.549
|
0.332
|
0.020
|
0.766
|
0.183
|
0.061
|
0.063
|
0.007
|
0.046
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004258
|
2.000
|
1.000
|
Hsc_gene_18829.t1
|
— | — |
Q965G5.2 MAP kinase-activated protein kinase mak-2 [Caenorhabditis elegans]
|
KAI1718720.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.893|GO:0009987_0.826|GO:0005575_0.758|GO:0110165_0.750|GO:0003674_0.712|GO:0065007_0.702|GO:0050789_0.698|GO:0005622_0.667|GO:0050794_0.660|GO:0050896_0.634|GO:0005737_0.598|GO:0008152_0.570|GO:0044238_0.556|GO:0003824_0.545|GO:0044237_0.539|GO:0016020_0.537|GO:0043226_0.537|GO:0051716_0.537|GO:0043170_0.529|GO:0043229_0.511
|
IPR000719+10-184_10-186_14-109+|IPR011009+14-180+|IPR017441+16-39+|IPR050205+11-111+
|
SM00220+10-184+
|
PF00069+14-109+Protein_kinase_domain
|
G3DSA:3.30.200.20:FF:000156+5-87+MAP_kinase-activated_protein_kinase_3
|
PTHR24349+11-111+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-186
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
21042.070
|
8.045
|
5.000
|
24.731
|
13.978
|
45.699
|
54.301
|
14.516
|
10.215
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
301.634
|
597.021
|
298.845
|
267.206
|
310.150
|
330.346
|
444.651
|
391.970
|
244.998
|
145.829
|
188.330
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.228
|
-1.297
|
— |
0.184
|
— |
0.441
|
— |
0.325
|
— | — | — | — | — |
No JSON data available for plots.