Hg_chrom5_TN10mRNA_11145
Organism: Heterodera glycines Gene Locus: chr5:12310303-12311010 Feature type: polypeptideProtein Sequence
Length: 169
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.688 | 0.826 | 0.323 | 0.816 | 0.394 | 0.607 | 0.423 | 1.183 | 1.972 | 1.679 | 0.269 | 2.785 | 1.972 | 0.683 | 1.449 | 1.352 | 0.582 | 1.614 | 2.731 | 0.87 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10504
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
17-37
|
1.000
|
7-28
|
1.000
|
— | — |
0.000
|
— | — |
0.025
|
0.030
|
0.024
|
0.099
|
0.611
|
0.539
|
0.541
|
0.003
|
0.321
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004259
|
2.000
|
1.000
|
Hsc_gene_18830.t1
|
Hsc_gene_18830.t1
|
— |
P58873.1 Rhomboid-related protein 3 [Mus musculus]
|
KAH7698949.1 rhomboid family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0016020
|
GO:0008150_0.936|GO:0065007_0.769|GO:0050789_0.742|GO:0005575_0.709|GO:0110165_0.709|GO:0016020_0.689|GO:0071944_0.672|GO:0005886_0.668|GO:0009987_0.621|GO:0032501_0.535|GO:0050896_0.525|GO:0032502_0.507|GO:0048856_0.507
|
IPR022764+47-120+|IPR035952+46-129_47-123+|IPR051739+47-154+
|
— |
PF01694+47-120+Rhomboid_family
|
— |
PTHR45840+47-154+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-169
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.706
|
19539.410
|
10.113
|
10.000
|
15.385
|
15.976
|
34.320
|
65.680
|
11.243
|
4.142
|
44.379
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellowgreen
|
298.919
|
855.951
|
136.530
|
192.311
|
195.880
|
146.198
|
111.240
|
177.767
|
123.503
|
534.189
|
358.181
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.878
|
-2.291
|
0.603
|
— |
-0.407
|
-0.384
|
— |
-0.534
|
— | — | — | — | — |
No JSON data available for plots.