SCN Proteipedia

Hg_chrom5_TN10mRNA_11146

Organism: Heterodera glycines Gene Locus: chr5:12311265-12312078 Feature type: polypeptide

Protein Sequence

Length: 216

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.7	1.723	1.515	0.639	1.312	1.425	0.331	1.157	1.029	0.938	1.192	1.634	0.9	1.157	0.85	1.323	0.683	0.701	0.0	1.225	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10505	—	—	2.000	2.000	2.000	2.000	2.000	3.000	2.000	1.000	2.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKRP	—	—	—	—	—	—	0.000	—	—	0.926	0.104	0.005	0.215	0.030	0.086	0.044	0.017	0.039	0.014

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004260	2.000	1.000	Hsc_gene_18831.t1	Hsc_gene_18831.t1	—	O45784.1 Transcription initiation factor TFIID subunit 9 [Caenorhabditis elegans]	KAI1717117.1 transcription initiation factor IID, 31kD subunit domain-containing protein [Ditylenchus destructor]	No	0.140

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006352\|GO:0046982	GO:0008150_0.937\|GO:0009987_0.882\|GO:0005575_0.764\|GO:0110165_0.764\|GO:0005622_0.746\|GO:0008152_0.733\|GO:0043170_0.733\|GO:0065007_0.726\|GO:0050789_0.722\|GO:0044238_0.716\|GO:0009058_0.715\|GO:0009059_0.715\|GO:0010467_0.715\|GO:0044237_0.715\|GO:0044249_0.715\|GO:0050794_0.705\|GO:0006139_0.701\|GO:0090304_0.692\|GO:0034654_0.690\|GO:0043226_0.689\|GO:0016070_0.688\|GO:0141187_0.686\|GO:0032774_0.681\|GO:0043229_0.681\|GO:0016020_0.674\|GO:0006351_0.662\|GO:0019222_0.644\|GO:0031323_0.643\|GO:0043227_0.637\|GO:0043231_0.632\|GO:0005634_0.630\|GO:0048518_0.630\|GO:0060255_0.630\|GO:0006366_0.628\|GO:0048522_0.625\|GO:0009889_0.612\|GO:0010468_0.611\|GO:0010556_0.611\|GO:0031326_0.611\|GO:0080090_0.554\|GO:0003674_0.533\|GO:0005488_0.531\|GO:0009893_0.524\|GO:0019219_0.521\|GO:0031325_0.517\|GO:0051252_0.516\|GO:0006355_0.514\|GO:0010604_0.514\|GO:2001141_0.514\|GO:0009891_0.511\|GO:0031328_0.510	IPR003162+24-142_27-143+\|IPR009072+27-92_30-91+\|IPR051431+9-208+	—	PF02291+24-142+Transcription_initiation_factor_IID,_31kD_subunit	—	PTHR48068+9-208+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	134-216	1.000	1-133	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.521	24617.360	4.886	-6.500	30.556	9.722	56.944	43.056	14.352	16.204	50.463

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	blue	817.146	897.774	625.465	309.364	297.277	291.618	239.085	401.947	1034.461	1650.719	1386.609

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.751	-1.674	-0.908	—	—	-0.279	0.358	-0.609	—	—	—	—	—

No JSON data available for plots.

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