Hg_chrom5_TN10mRNA_11147
Organism: Heterodera glycines Gene Locus: chr5:12312730-12314467 Feature type: polypeptideProtein Sequence
Length: 221
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.105 | 1.263 | 0.823 | 0.312 | 2.489 | 1.16 | 0.431 | 0.905 | 1.106 | 1.04 | 1.371 | 2.662 | 1.508 | 0.435 | 0.831 | 0.582 | 0.742 | 0.617 | 0.696 | 0.932 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10506
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.770
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RLRKRAR,RKRARDK,KREAMLSETEVEEKKKRVA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.537
|
0.315
|
0.024
|
0.584
|
0.150
|
0.106
|
0.167
|
0.009
|
0.092
|
0.165
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004261
|
2.000
|
1.000
|
Hsc_gene_18837.t1
|
Hsc_gene_18837.t1
|
— |
O02108.1 Probable Hsp90 co-chaperone cdc37 [Caenorhabditis elegans]
|
KAH7706973.1 Hsp90 co-chaperone Cdc37 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.919|GO:0110165_0.917|GO:0005622_0.795|GO:0005737_0.629|GO:0003674_0.549|GO:0032991_0.522|GO:0005488_0.519|GO:0008150_0.506
|
IPR004918+3-219+|IPR013873+143-220_149-219+|IPR013874+2-137_20-126+|IPR038189+1-130+
|
SM01069+143-220+|SM01070+2-137+
|
PF08564+149-219+Cdc37_C_terminal_domain|PF08565+20-126+Cdc37_Hsp90_binding_domain
|
— |
PTHR12800+3-219+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
195-221
|
1.000
|
1-194
|
2n5x_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.900
|
25687.050
|
4.579
|
-12.000
|
34.389
|
11.312
|
52.941
|
47.059
|
14.932
|
19.457
|
38.914
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
719.821
|
499.130
|
501.708
|
502.175
|
550.886
|
488.601
|
544.296
|
662.928
|
1339.520
|
738.430
|
996.040
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.223
|
-0.128
|
— | — | — | — |
0.337
|
— | — | — | — | — | — |
No JSON data available for plots.