Hg_chrom5_TN10mRNA_11149
Organism: Heterodera glycines Gene Locus: chr5:12319458-12322134 Feature type: polypeptideProtein Sequence
Length: 598
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.797 | 1.672 | 0.912 | 0.519 | 1.394 | 1.115 | 0.597 | 1.756 | 1.041 | 1.13 | 0.861 | 0.984 | 1.115 | 0.611 | 1.399 | 1.075 | 0.713 | 0.836 | 1.672 | 1.23 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10508
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRKNQLEERQRKARRQ,RRKDEKGNLVIQMGEKRRI,RKDEKGNLVIQMGEKRRIW
|
— | — | — | — | — | — |
0.000
|
— | — |
0.346
|
0.158
|
0.008
|
0.585
|
0.285
|
0.330
|
0.471
|
0.013
|
0.314
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004263
|
2.000
|
1.000
|
Hsc_gene_18840.t1
|
— | — |
P22059.1 Oxysterol-binding protein 1 [Homo sapiens]
|
KAF7636048.1 Oxysterol-binding protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0005575_0.795|GO:0110165_0.788|GO:0008150_0.739|GO:0005622_0.737|GO:0003674_0.683|GO:0005737_0.632|GO:0016020_0.629|GO:0009987_0.626|GO:0043226_0.591|GO:0005488_0.589|GO:0043229_0.566|GO:0043227_0.537|GO:0071944_0.529|GO:0043231_0.507
|
IPR000648+2-568_269-568+|IPR001849+1-92_1-94_2-91+|IPR011993+1-98+|IPR018494+349-359+|IPR037239+269-568+
|
SM00233+1-94+
|
PF00169+2-91+PH_domain|PF01237+269-568+Oxysterol-binding_protein
|
— |
PTHR10972+2-568+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
512-598
|
1.000
|
1-511
|
7v62_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
69194.530
|
6.960
|
5.500
|
29.431
|
13.880
|
52.843
|
47.157
|
16.054
|
13.378
|
46.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.