SCN Proteipedia

Hg_chrom5_TN10mRNA_11150

Organism: Heterodera glycines Gene Locus: chr5:12322211-12324721 Feature type: polypeptide

Protein Sequence

Length: 365

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.86	0.828	1.096	0.756	1.279	1.335	0.522	1.781	1.4	1.185	0.955	1.45	1.37	0.316	1.23	0.978	0.988	1.245	0.632	0.483	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10509	—	—	1.222	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	RKRK	—	—	—	—	—	—	0.033	—	—	0.644	0.275	0.015	0.555	0.049	0.122	0.082	0.021	0.062	0.073

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002272	3.000	1.000	Hsc_gene_18841.t1	Hsc_gene_18841.t1	—	P50444.1 Protein pelota homolog [Caenorhabditis elegans]	KAF7636052.1 Pelota-like protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0070481\|GO:0070966\|GO:0071025	GO:0008150_0.942\|GO:0009987_0.890\|GO:0065007_0.817\|GO:0050789_0.799\|GO:0050794_0.781\|GO:0008152_0.673\|GO:0005575_0.660\|GO:0044237_0.654\|GO:0110165_0.649\|GO:0009058_0.636\|GO:0043170_0.636\|GO:0044249_0.627\|GO:0009059_0.613\|GO:0019222_0.605\|GO:0010467_0.604\|GO:0031323_0.598\|GO:0060255_0.597\|GO:0005622_0.596\|GO:0009889_0.586\|GO:0031326_0.586\|GO:0010468_0.583\|GO:0010556_0.583\|GO:0071840_0.565\|GO:0016043_0.560\|GO:0005737_0.545\|GO:0044238_0.538\|GO:0048519_0.525\|GO:0048523_0.514	IPR004405+1-350+\|IPR005140+1-97_25-93+\|IPR005141+104-236+\|IPR005142+243-338+\|IPR029064+239-358_244-343+\|IPR038069+1-102_28-94+\|IPR042226+103-238+	SM01194+1-97+	PF03463+25-93+eRF1_domain_1\|PF03464+104-236+eRF1_domain_2\|PF03465+243-338+eRF1_domain_3	G3DSA:3.30.1330.30:FF:000008+240-353+Protein_pelota_homolog	PTHR10853+1-350+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-5;343-365	1.000	6-342	5eo3_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.613	41456.380	6.683	1.500	29.589	10.959	51.233	48.767	15.890	13.699	46.301

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	554.165	778.346	1227.038	754.238	554.034	499.274	572.518	1033.208	256.574	200.045	224.271

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.428	-0.182	-0.594	-0.476	—	0.208	0.944	-0.709	—	—	—	—	—

No JSON data available for plots.

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