Hg_chrom5_TN10mRNA_11151
Organism: Heterodera glycines Gene Locus: chr5:12324826-12325753 Feature type: polypeptideProtein Sequence
Length: 206
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.734 | 1.016 | 1.324 | 1.004 | 0.809 | 0.747 | 0.636 | 1.942 | 0.971 | 1.378 | 1.103 | 0.571 | 1.753 | 0.84 | 1.585 | 1.04 | 0.637 | 0.956 | 1.12 | 0.571 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10510
|
— | — |
2.444
|
3.000
|
2.000
|
2.000
|
2.000
|
2.000
|
3.000
|
1.000
|
2.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.928
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
FKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.078
|
0.962
|
0.034
|
0.182
|
0.060
|
0.078
|
0.120
|
0.029
|
0.119
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001249
|
4.000
|
1.000
|
Hsc_gene_18842.t1
|
Hsc_gene_18842.t1
|
— |
Q5XIM4.1 ATP synthase subunit s, mitochondrial [Rattus norvegicus]
|
KAH7717572.1 Protein C05C8.1 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.889|GO:0110165_0.889|GO:0005622_0.847|GO:0016020_0.798|GO:0043226_0.786|GO:0043229_0.784|GO:0005737_0.774|GO:0043227_0.764|GO:0043231_0.751|GO:0031090_0.573|GO:0005739_0.570|GO:0031967_0.560|GO:0005740_0.553|GO:0031966_0.553|GO:0005743_0.550|GO:0019866_0.550
|
IPR006553+114-139_142-167+|IPR032675+24-204+
|
SM00367+114-139_142-167+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-206
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.829
|
23579.980
|
8.991
|
10.000
|
31.068
|
13.592
|
49.515
|
50.485
|
18.932
|
12.136
|
48.058
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
44.575
|
82.598
|
91.787
|
47.858
|
43.408
|
30.675
|
57.511
|
68.115
|
5.783
|
32.449
|
21.021
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.924
|
-0.830
|
— | — |
0.918
|
1.045
|
— | — | — | — | — | — |
No JSON data available for plots.