Hg_chrom5_TN10mRNA_11155
Organism: Heterodera glycines Gene Locus: chr5:12340665-12350168 Feature type: polypeptideProtein Sequence
Length: 973
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.968 | 1.434 | 1.009 | 0.815 | 0.891 | 1.818 | 0.477 | 1.49 | 0.936 | 1.431 | 0.747 | 1.39 | 1.228 | 0.771 | 1.217 | 1.086 | 0.859 | 0.841 | 0.791 | 0.665 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10514
|
— | — |
1.778
|
2.000
|
1.000
|
1.000
|
2.000
|
3.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
GAVVED
|
— | — | — | — | — | — |
0.000
|
— | — |
0.296
|
0.091
|
0.010
|
0.701
|
0.076
|
0.241
|
0.200
|
0.025
|
0.115
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001672
|
3.000
|
1.000
|
Hsc_gene_13990.t1
|
— | — | — |
KAF7638764.1 GCP_C_terminal domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0043015
|
— |
IPR040457+503-800+|IPR042241+503-957+
|
— |
PF04130+503-800+Gamma_tubulin_complex_component_C-terminal
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-113;782-929
|
2.000
|
114-781;930-973
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
110010.810
|
7.500
|
14.500
|
24.769
|
10.689
|
50.874
|
49.126
|
13.875
|
10.894
|
48.818
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
748.824
|
618.624
|
365.489
|
655.201
|
778.278
|
586.059
|
849.247
|
184.292
|
437.777
|
1433.828
|
1006.949
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.988
|
— |
0.950
|
0.217
|
-0.395
|
0.546
|
-1.777
|
2.348
|
— | — | — | — | — |
No JSON data available for plots.