Hg_chrom5_TN10mRNA_11158
Organism: Heterodera glycines Gene Locus: chr5:12357385-12358752 Feature type: polypeptideProtein Sequence
Length: 343
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.542 | 1.153 | 1.484 | 0.503 | 0.972 | 1.047 | 0.659 | 0.583 | 1.749 | 1.143 | 0.795 | 2.058 | 2.349 | 1.065 | 1.011 | 1.125 | 0.669 | 0.663 | 1.346 | 0.6 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10517
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RKWKLGKMKIRRKIG
|
45-65
|
0.934
|
— | — | — | — |
0.000
|
— | — |
0.659
|
0.307
|
0.053
|
0.562
|
0.165
|
0.047
|
0.056
|
0.014
|
0.119
|
0.154
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000041
|
16.000
|
9.000
|
Hsc_gene_17416.t1;Hsc_gene_17666.t1;Hsc_gene_26293.t1;Hsc_gene_26326.t1;Hsc_gene_26331.t1;Hsc_gene_26377.t1;Hsc_gene_26378.t1;Hsc_gene_26384.t1;Hsc_gene_706.t2
|
— | — | — |
KAI3411074.1 hypothetical protein GPALN_003159 [Globodera pallida]
|
MDX5324933
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
332-343
|
1.000
|
1-331
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.501
|
39341.890
|
4.629
|
-11.000
|
25.364
|
13.411
|
46.356
|
53.644
|
11.370
|
13.994
|
46.647
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkorange
|
538.164
|
258.352
|
341.533
|
581.096
|
638.796
|
304.661
|
362.432
|
346.159
|
151.938
|
1178.129
|
738.333
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.032
|
0.877
|
— |
-1.054
|
0.261
|
— | — | — | — | — | — | — |
No JSON data available for plots.