Hg_chrom5_TN10mRNA_11159
Organism: Heterodera glycines Gene Locus: chr5:12359780-12361305 Feature type: polypeptideProtein Sequence
Length: 347
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.637 | 1.072 | 1.467 | 0.497 | 1.009 | 1.035 | 0.583 | 0.865 | 1.857 | 1.129 | 0.873 | 1.526 | 2.482 | 1.164 | 0.941 | 1.112 | 0.567 | 0.611 | 1.33 | 0.593 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10518
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.366
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RRFDYFIDEHFKTRKWKLR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.618
|
0.246
|
0.040
|
0.522
|
0.162
|
0.051
|
0.093
|
0.019
|
0.199
|
0.172
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000041
|
16.000
|
9.000
|
Hsc_gene_17416.t1;Hsc_gene_17666.t1;Hsc_gene_26293.t1;Hsc_gene_26326.t1;Hsc_gene_26331.t1;Hsc_gene_26377.t1;Hsc_gene_26378.t1;Hsc_gene_26384.t1;Hsc_gene_706.t2
|
Hsc_gene_19525.t1
|
— | — |
KAI3411074.1 hypothetical protein GPALN_003159 [Globodera pallida]
|
HET7649529
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;339-347
|
1.000
|
3-338
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.521
|
39850.460
|
4.768
|
-10.000
|
26.225
|
14.409
|
46.110
|
53.890
|
12.104
|
14.121
|
45.821
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
248.681
|
80.192
|
115.983
|
112.382
|
208.492
|
108.231
|
145.285
|
143.751
|
6.539
|
740.206
|
425.777
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.304
|
0.349
|
— |
0.860
|
-0.932
|
0.433
|
— | — |
-6.931
|
4.296
|
— | — | — |
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