Hg_chrom5_TN10mRNA_11160
Organism: Heterodera glycines Gene Locus: chr5:12361481-12362299 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.413 | 0.899 | 0.301 | 1.524 | 0.46 | 1.275 | 0.921 | 1.381 | 2.333 | 1.195 | 0.586 | 0.325 | 1.535 | 1.062 | 1.015 | 1.342 | 0.634 | 0.502 | 0.85 | 0.65 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10519
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.495
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKAHFSIFGLGPKRPRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.317
|
0.451
|
0.185
|
0.663
|
0.211
|
0.209
|
0.154
|
0.238
|
0.153
|
0.193
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004265
|
2.000
|
1.000
|
Hsc_gene_6610.t1
|
Hsc_gene_6610.t1
|
— |
Q11186.2 Patanin-like phospholipase domain-containing protein atgl-1 [Caenorhabditis elegans]
|
KAI1696898.1 patatin-like phospholipase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629|GO:0016042|GO:0016787
|
GO:0005575_0.909|GO:0110165_0.896|GO:0005622_0.795|GO:0008150_0.703|GO:0043226_0.682|GO:0043229_0.658|GO:0009987_0.634|GO:0003674_0.632|GO:0008152_0.548|GO:0044238_0.532|GO:0044237_0.531|GO:0009058_0.527|GO:0044249_0.513
|
IPR002641+32-101_32-181+|IPR016035+32-107+|IPR033562+21-112+
|
— |
PF01734+32-101+Patatin-like_phospholipase
|
— |
PTHR12406+21-112+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-181
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.884
|
19479.640
|
9.134
|
10.500
|
16.022
|
11.602
|
38.122
|
61.878
|
11.602
|
4.420
|
51.934
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
130.354
|
19.969
|
16.161
|
4.543
|
19.360
|
11.123
|
7.826
|
27.856
|
7.345
|
524.726
|
302.991
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-2.276
|
-1.725
|
2.057
|
— | — |
1.221
|
-1.684
|
-6.214
|
— |
-4.450
|
— | — |
No JSON data available for plots.