SCN Proteipedia

Hg_chrom5_TN10mRNA_11161

Organism: Heterodera glycines Gene Locus: chr5:12364184-12368411 Feature type: polypeptide

Protein Sequence

Length: 841

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.774	0.47	0.886	0.738	1.268	0.823	0.878	1.13	0.978	1.366	0.811	0.909	1.751	0.983	1.529	1.444	0.741	0.739	0.823	0.874	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10520	—	—	1.444	2.000	1.000	1.000	2.000	1.000	2.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.711

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	16-57	0.993	35-106	0.996	—	—	0.000	—	—	0.258	0.272	0.063	0.473	0.352	0.158	0.206	0.139	0.148	0.092

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004266	2.000	1.000	Hsc_gene_6612.t1	Hsc_gene_6612.t1;Hsc_gene_6612.t2	—	Q9Z2A0.2 3-phosphoinositide-dependent protein kinase 1 [Mus musculus]	KAF7630774.1 Protein kinase domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.983\|GO:0009987_0.960\|GO:0005575_0.903\|GO:0110165_0.900\|GO:0003674_0.888\|GO:0065007_0.864\|GO:0050789_0.859\|GO:0050794_0.844\|GO:0003824_0.837\|GO:0140096_0.837\|GO:0016740_0.825\|GO:0004672_0.817\|GO:0016301_0.817\|GO:0016772_0.817\|GO:0016773_0.817\|GO:0005622_0.785\|GO:0050896_0.731\|GO:0016020_0.690\|GO:0051716_0.680\|GO:0007154_0.643\|GO:0004674_0.637\|GO:0023052_0.636\|GO:0007165_0.629\|GO:0071944_0.629\|GO:0048518_0.608\|GO:0005737_0.597\|GO:0016043_0.581\|GO:0071840_0.581\|GO:0005886_0.544\|GO:0032502_0.534\|GO:0048856_0.534\|GO:0048522_0.530\|GO:0043226_0.528\|GO:0032501_0.516\|GO:0005488_0.511\|GO:0048519_0.504	IPR000719+244-544_247-405_438-543+\|IPR008271+368-380+\|IPR011009+241-574+\|IPR011993+633-693+\|IPR017441+250-273+\|IPR018108+686-770_706-772_797-839+\|IPR023395+705-841_706-837+\|IPR039046+242-544+\|IPR050236+135-567+	SM00220+244-544+	PF00069+247-405_438-543+Protein_kinase_domain\|PF00153+706-772_797-839+Mitochondrial_carrier_protein	G3DSA:1.10.510.10:FF:000024+332-567+Probable_serine/threonine-protein_kinase_cot-1	PTHR24356+135-567+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	84-234	2.000	1-83;235-841	1uvr_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.787	94537.510	7.811	12.500	27.586	12.604	47.444	52.556	15.101	12.485	47.681

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	531.562	2414.747	724.385	175.157	282.689	267.275	220.210	498.957	170.897	478.629	346.744

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.968	-3.923	-1.938	0.659	—	—	0.802	-1.040	—	—	—	—	—

No JSON data available for plots.

Back to Browser