Hg_chrom5_TN10mRNA_11162
Organism: Heterodera glycines Gene Locus: chr5:12370049-12374039 Feature type: polypeptideProtein Sequence
Length: 776
(Signal peptide: 1-32)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.899 | 1.109 | 0.656 | 0.355 | 1.052 | 1.322 | 0.537 | 1.031 | 1.002 | 1.602 | 0.781 | 1.213 | 2.005 | 1.115 | 1.315 | 1.602 | 0.592 | 0.625 | 1.388 | 0.303 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10521
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.696
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
nucleus
|
chloroplast
|
RMYKILKAGRKEKSRE,RRRMYKILKAGRKEKSR
|
— | — |
66-86
|
0.985
|
1-32
|
0.662
|
0.847
|
0.000
|
0.000
|
0.529
|
0.082
|
0.122
|
0.411
|
0.247
|
0.175
|
0.214
|
0.457
|
0.275
|
0.280
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000589
|
7.000
|
0.000
|
0.000
|
Hsc_gene_10773.t1;Hsc_gene_15881.t1
|
— | — |
KAH7712356.1 huntingtin-like protein, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.963|GO:0005575_0.949|GO:0110165_0.949|GO:0009987_0.928|GO:0016020_0.912|GO:0065007_0.906|GO:0050789_0.895|GO:0005622_0.889|GO:0050794_0.877|GO:0043226_0.849|GO:0043229_0.845|GO:0003674_0.837|GO:0051179_0.812|GO:0005886_0.803|GO:0071944_0.803|GO:0043227_0.800|GO:0005488_0.792|GO:0071840_0.790|GO:0043231_0.788|GO:0016043_0.783|GO:0006810_0.782|GO:0051234_0.782|GO:0005737_0.755|GO:0051641_0.734|GO:0006996_0.726|GO:0032879_0.712|GO:0033036_0.707|GO:0070727_0.707|GO:0007010_0.688|GO:0007017_0.683|GO:0000226_0.678|GO:0043228_0.627|GO:0043232_0.627|GO:0030054_0.623|GO:0098590_0.604|GO:0045202_0.595|GO:0042995_0.592|GO:0050896_0.592|GO:0120025_0.589|GO:0051716_0.576|GO:0031982_0.575|GO:0032501_0.575|GO:0043005_0.575|GO:0097708_0.563|GO:0031410_0.561|GO:0030424_0.557|GO:0048518_0.550|GO:0008152_0.545|GO:0043170_0.545|GO:0005515_0.543|GO:0007154_0.543|GO:0023052_0.537|GO:0048522_0.537|GO:0044238_0.533|GO:0048519_0.532|GO:0019222_0.530|GO:0031323_0.530|GO:0044237_0.530|GO:0007165_0.522|GO:0060255_0.522|GO:0080090_0.514|GO:0048523_0.512|GO:0010646_0.500|GO:0023051_0.493|GO:0065008_0.492|GO:0019538_0.487|GO:0071705_0.480|GO:0051649_0.475|GO:0008104_0.474|GO:0051128_0.473|GO:0060341_0.472|GO:0097159_0.471|GO:0009628_0.470|GO:0003008_0.469|GO:0044085_0.467|GO:0005773_0.465|GO:0022607_0.465|GO:0030030_0.464|GO:0036211_0.464|GO:0042592_0.464|GO:0043412_0.464|GO:0120036_0.464|GO:0016192_0.463|GO:0005634_0.462|GO:0008219_0.462|GO:0012501_0.462|GO:0065009_0.461|GO:0046907_0.460|GO:0006915_0.459|GO:0042981_0.457|GO:0043067_0.457|GO:0051246_0.457|GO:0003824_0.455|GO:0006793_0.455|GO:0031344_0.455|GO:0043069_0.455|GO:0050790_0.455|GO:0120035_0.455|GO:0006796_0.454|GO:0032991_0.454|GO:0043066_0.453|GO:0048878_0.453|GO:0051130_0.453|GO:0050877_0.452|GO:0033365_0.451|GO:0044087_0.451|GO:0140096_0.451|GO:0007610_0.450|GO:0033043_0.450|GO:0030031_0.449|GO:0051640_0.449|GO:0051656_0.449|GO:0120031_0.449|GO:0048193_0.448|GO:0006468_0.447|GO:0007018_0.447|GO:0010256_0.447|GO:0016310_0.447|GO:0019220_0.447|GO:0042325_0.447|GO:0051174_0.447|GO:0070925_0.447|GO:0001932_0.446|GO:0012505_0.446|GO:0016740_0.446|GO:0022411_0.446|GO:0031399_0.446|GO:0050890_0.446|GO:0007611_0.445|GO:0010970_0.445|GO:0030705_0.445|GO:0051648_0.445|GO:0051650_0.445|GO:0099111_0.445|GO:0001578_0.444|GO:0005929_0.444|GO:0006903_0.444|GO:0030990_0.444|GO:0031503_0.444|GO:0035082_0.444|GO:0035735_0.444|GO:0042073_0.444|GO:0044089_0.444|GO:0044782_0.444|GO:0048199_0.444|GO:0050801_0.444|GO:0055080_0.444|GO:0060271_0.444|GO:0060491_0.444|GO:0061512_0.444|GO:0097712_0.444|GO:0098771_0.444|GO:0120032_0.444|GO:1902115_0.444|GO:1905349_0.444|GO:0000166_0.440|GO:0004672_0.440|GO:0004674_0.440|GO:0004690_0.440|GO:0004691_0.440|GO:0007612_0.440|GO:0010638_0.440|GO:0016301_0.440|GO:0016772_0.440|GO:0016773_0.440|GO:0017076_0.440|GO:0030551_0.440|GO:0030552_0.440|GO:0030554_0.440|GO:0031346_0.440|GO:0032553_0.440|GO:0032555_0.440|GO:0032559_0.440|GO:0036094_0.440|GO:0043167_0.440|GO:0043168_0.440|GO:0043549_0.440|GO:0045724_0.440|GO:0045859_0.440|GO:0047496_0.440|GO:0051338_0.440|GO:0071900_0.440|GO:0072384_0.440|GO:0097367_0.440|GO:0099518_0.440|GO:0120034_0.440|GO:1901265_0.440|GO:1901363_0.440|GO:1902017_0.440|GO:1902117_0.440|GO:2000479_0.440|GO:0031974_0.394|GO:0031981_0.394|GO:0043233_0.394|GO:0070013_0.394|GO:0005856_0.392|GO:0036477_0.383|GO:0005654_0.381|GO:0005783_0.380|GO:0030425_0.379|GO:0097447_0.379|GO:0015630_0.374|GO:0005815_0.368|GO:0005814_0.363|GO:0048471_0.363|GO:0016234_0.355
|
IPR028426+503-758+|IPR048413+517-665+
|
— |
PF20927+517-665+Huntingtin,_C-terminal_HEAT
|
— |
PTHR10170+503-758+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
111-257
|
2.000
|
1-110;258-776
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.883
|
87705.320
|
9.625
|
21.000
|
23.582
|
12.113
|
48.325
|
51.675
|
13.660
|
9.923
|
46.392
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
312.677
|
364.375
|
509.345
|
260.806
|
222.023
|
200.698
|
315.194
|
366.257
|
97.971
|
454.971
|
301.971
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.252
|
-0.620
|
-0.856
|
-0.264
|
— |
0.662
|
0.753
|
— | — | — | — | — | — |