Hg_chrom5_TN10mRNA_11163
Organism: Heterodera glycines Gene Locus: chr5:12374732-12378342 Feature type: polypeptideProtein Sequence
Length: 713
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.979 | 0.913 | 0.918 | 1.403 | 1.005 | 1.762 | 0.267 | 1.332 | 0.904 | 1.08 | 0.935 | 1.98 | 1.403 | 1.78 | 1.546 | 0.761 | 0.506 | 1.063 | 0.432 | 0.371 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10522
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.817
|
0.053
|
0.003
|
0.401
|
0.091
|
0.051
|
0.052
|
0.022
|
0.043
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004267
|
2.000
|
1.000
|
Hsc_gene_10768.t1
|
Hsc_gene_10768.t1
|
— | — |
KAI1709131.1 cutC family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.965|GO:0065007_0.952|GO:0050789_0.949|GO:0005575_0.942|GO:0110165_0.942|GO:0009987_0.940|GO:0050794_0.940|GO:0003674_0.904|GO:0032501_0.901|GO:0005622_0.876|GO:0050896_0.850|GO:0016020_0.849|GO:0008152_0.831|GO:0019222_0.831|GO:0048519_0.828|GO:0043170_0.824|GO:0043226_0.824|GO:0048523_0.822|GO:0060255_0.821|GO:0031323_0.816|GO:0044237_0.816|GO:0044238_0.801|GO:0009058_0.799|GO:0009059_0.799|GO:0044249_0.799|GO:0010467_0.798|GO:0009889_0.794|GO:0010556_0.794|GO:0031326_0.794|GO:0043229_0.789|GO:0010468_0.781|GO:0051239_0.776|GO:0048583_0.770|GO:0019538_0.757|GO:0043227_0.752|GO:0009892_0.737|GO:0031324_0.730|GO:0010605_0.729|GO:0043412_0.727|GO:0036211_0.722|GO:0006950_0.721|GO:0003824_0.716|GO:0140096_0.716|GO:0009890_0.713|GO:0010558_0.713|GO:0031327_0.713|GO:0043231_0.712|GO:0051241_0.707|GO:0005737_0.703|GO:0009605_0.701|GO:0009056_0.699|GO:0080134_0.699|GO:0005634_0.696|GO:0009057_0.696|GO:0044419_0.694|GO:0016567_0.693|GO:0032446_0.693|GO:0043687_0.693|GO:0070647_0.693|GO:0009607_0.691|GO:0010629_0.691|GO:0016740_0.691|GO:0006952_0.690|GO:0043207_0.690|GO:0051707_0.689|GO:0006508_0.687|GO:0030163_0.687|GO:0098542_0.687|GO:0001816_0.686|GO:0031347_0.685|GO:0032101_0.685|GO:0001817_0.684|GO:0000209_0.682|GO:0140546_0.682|GO:0002831_0.681|GO:0004842_0.681|GO:0016746_0.681|GO:0016755_0.681|GO:0019787_0.681|GO:0051603_0.680|GO:0006511_0.678|GO:0019941_0.678|GO:0043632_0.678|GO:0010498_0.677|GO:0061630_0.676|GO:0061659_0.676|GO:0001818_0.675|GO:0009615_0.675|GO:0043161_0.674|GO:0051607_0.673|GO:0032479_0.670|GO:0032480_0.670|GO:0032606_0.670|GO:0032608_0.670|GO:0032648_0.670|GO:0050688_0.670|GO:0050691_0.670|GO:0070936_0.670|GO:0031974_0.650|GO:0031981_0.650|GO:0043233_0.650|GO:0070013_0.650|GO:0005654_0.647|GO:0005829_0.599
|
IPR002867+355-421_359-421+|IPR044066+269-502+|IPR047545+371-426+|IPR047546+437-493+|IPR051628+188-515+
|
SM00647+355-421+
|
PF01485+359-421+IBR_domain,_a_half_RING-finger_domain
|
— |
PTHR22770+188-515+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
524-713
|
1.000
|
1-523
|
7m4o_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.802
|
81326.270
|
8.683
|
28.500
|
27.489
|
9.537
|
46.704
|
53.296
|
16.410
|
11.080
|
48.387
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
612.917
|
1059.672
|
702.038
|
684.282
|
724.161
|
574.270
|
767.486
|
795.827
|
370.084
|
413.546
|
394.920
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.823
|
-0.768
|
— | — |
-0.320
|
0.428
|
0.364
|
— | — | — | — | — | — |
No JSON data available for plots.