Hg_chrom5_TN10mRNA_11164
Organism: Heterodera glycines Gene Locus: chr5:12379082-12381595 Feature type: polypeptideProtein Sequence
Length: 310
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.05 | 0.6 | 1.114 | 0.445 | 1.075 | 1.323 | 0.653 | 1.29 | 1.004 | 1.526 | 0.391 | 1.328 | 1.434 | 1.117 | 1.777 | 0.645 | 0.793 | 1.075 | 0.993 | 0.949 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10523
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.326
|
0.307
|
0.061
|
0.672
|
0.300
|
0.103
|
0.138
|
0.057
|
0.083
|
0.118
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000490
|
5.000
|
2.000
|
Hsc_gene_19435.t1;Hsc_gene_8566.t1
|
Hsc_gene_8566.t1
|
— |
Q19020.1 Dynein heavy chain, cytoplasmic [Caenorhabditis elegans]
|
KAI1728166.1 dynein heavy chain and region d6 of dynein motor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007018|GO:0030286|GO:0045505|GO:0051959
|
GO:0008150_0.922|GO:0009987_0.847|GO:0005575_0.837|GO:0110165_0.837|GO:0005622_0.753|GO:0043226_0.696|GO:0005737_0.682|GO:0016020_0.670|GO:0043229_0.665|GO:0003674_0.656|GO:0071944_0.627|GO:0005886_0.543|GO:0043227_0.542|GO:0007017_0.540|GO:0071840_0.520|GO:0016043_0.518|GO:0051179_0.517|GO:0006810_0.516|GO:0051234_0.516|GO:0043228_0.513|GO:0043232_0.511
|
IPR026983+118-287+|IPR027417+110-275+|IPR029044+1-124_4-117+|IPR054354+178-270+
|
— |
PF22597+178-270+Dynein_heavy_chain,_ATPase_lid_domain
|
— |
PTHR45703+118-287+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-310
|
9e28_f
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
35321.440
|
6.499
|
0.000
|
26.452
|
12.258
|
43.548
|
56.452
|
13.871
|
12.581
|
46.774
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
128.434
|
104.541
|
140.971
|
168.272
|
227.877
|
202.637
|
256.714
|
181.315
|
103.065
|
3.727
|
46.300
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.550
|
0.364
|
0.406
|
— |
0.352
|
— |
0.645
|
4.147
|
— |
5.587
|
— | — |
No JSON data available for plots.