Hg_chrom5_TN10mRNA_11167
Organism: Heterodera glycines Gene Locus: chr5:12392412-12393282 Feature type: polypeptideProtein Sequence
Length: 103
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.903 | 1.806 | 0.883 | 1.004 | 0.485 | 1.494 | 0.231 | 2.427 | 0.863 | 0.918 | 0.736 | 1.142 | 0.539 | 0.187 | 2.774 | 1.387 | 1.432 | 0.736 | 1.494 | 0.571 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10526
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKR,RKRK
|
20-40
|
0.981
|
— | — | — | — |
0.000
|
— | — |
0.660
|
0.280
|
0.009
|
0.226
|
0.034
|
0.021
|
0.016
|
0.009
|
0.081
|
0.281
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004269
|
2.000
|
1.000
|
Hsc_gene_21472.t1
|
— | — |
Q91WB4.1 Pleckstrin homology domain-containing family F member 2 [Mus musculus]
|
KAI3414183.1 Pleckstrin y domain-containing F member 2 [Globodera pallida]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.909|GO:0110165_0.895|GO:0005622_0.824|GO:0016020_0.794|GO:0043226_0.792|GO:0043229_0.781|GO:0043227_0.727|GO:0043231_0.712|GO:0005737_0.688|GO:0071944_0.622|GO:0005886_0.613|GO:0008150_0.592|GO:0005773_0.565|GO:0012505_0.564|GO:0031982_0.558|GO:0031410_0.549|GO:0097708_0.549|GO:0009987_0.541|GO:0003674_0.514|GO:0005488_0.514
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;70-103
|
1.000
|
7-69
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.696
|
12041.550
|
11.417
|
13.500
|
31.068
|
10.680
|
63.107
|
36.893
|
23.301
|
7.767
|
49.515
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
30.402
|
25.879
|
35.515
|
42.598
|
52.475
|
30.253
|
64.239
|
38.022
|
22.723
|
7.598
|
14.081
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.582
|
— | — |
-0.780
|
1.097
|
— |
0.900
|
— | — | — | — | — |
No JSON data available for plots.