Hg_chrom5_TN10mRNA_11171
Organism: Heterodera glycines Gene Locus: chr5:12430027-12431484 Feature type: polypeptideProtein Sequence
Length: 190
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.285 | 0.49 | 1.148 | 0.181 | 0.789 | 0.81 | 0.877 | 1.316 | 1.17 | 1.778 | 0.638 | 1.858 | 1.462 | 1.012 | 1.396 | 0.752 | 0.69 | 0.877 | 1.619 | 0.464 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10530
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.937
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — |
37-64
|
0.999
|
— | — |
0.000
|
— | — |
0.549
|
0.433
|
0.039
|
0.432
|
0.242
|
0.175
|
0.243
|
0.073
|
0.062
|
0.537
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002276
|
2.000
|
2.000
|
Hsc_gene_24405.t1;Hsc_gene_24405.t2
|
Hsc_gene_10760.t1;Hsc_gene_24405.t1;Hsc_gene_24405.t2
|
— |
Q96S44.2 EKC/KEOPS complex subunit TP53RK [Homo sapiens]
|
XP_018913058.1 PREDICTED: TP53-regulating kinase [Bemisia tabaci]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004674|GO:0005524|GO:0006468
|
GO:0005575_0.883|GO:0110165_0.812|GO:0008150_0.807|GO:0003674_0.655|GO:0005622_0.644|GO:0016020_0.635|GO:0009987_0.626|GO:0005737_0.583|GO:0003824_0.547|GO:0043226_0.542|GO:0043229_0.536|GO:0043227_0.518|GO:0043231_0.514
|
IPR000719+1-190+|IPR008266+91-103+|IPR011009+69-162+|IPR022495+71-188+
|
— |
PF06293+77-139+Lipopolysaccharide_kinase_(Kdo/WaaP)_family
|
— |
PTHR12209+71-188+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-190
|
7szd_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
21117.500
|
7.422
|
2.500
|
24.737
|
11.579
|
39.474
|
60.526
|
13.684
|
11.053
|
47.895
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
yellow
|
1243.063
|
1055.493
|
1714.401
|
1456.626
|
900.408
|
710.026
|
604.963
|
978.942
|
2609.839
|
698.201
|
1517.475
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.469
|
0.328
|
-0.126
|
-0.727
|
-0.328
|
-0.221
|
— |
-0.555
|
— | — | — | — | — |
No JSON data available for plots.