Hg_chrom5_TN10mRNA_11172
Organism: Heterodera glycines Gene Locus: chr5:12435202-12436279 Feature type: polypeptideProtein Sequence
Length: 190
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.734 | 1.102 | 0.766 | 1.27 | 1.491 | 1.35 | 0.501 | 1.053 | 1.404 | 0.711 | 1.037 | 2.167 | 1.462 | 1.012 | 1.396 | 0.827 | 0.69 | 1.116 | 0.81 | 0.774 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10531
|
— | — |
2.111
|
2.000
|
4.000
|
3.000
|
2.000
|
3.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKKK,RRLRI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.420
|
0.323
|
0.034
|
0.747
|
0.250
|
0.048
|
0.064
|
0.004
|
0.041
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001161
|
4.000
|
1.000
|
Hsc_gene_10765.t1
|
Hsc_gene_10765.t1
|
— |
Q6P799.3 Serine--tRNA ligase, cytoplasmic [Rattus norvegicus]
|
KAI3413677.1 putative serine--tRNA ligase, cytoplasmic [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0004812|GO:0004828|GO:0005524|GO:0006418|GO:0006434
|
GO:0005575_0.824|GO:0110165_0.810|GO:0005622_0.744|GO:0005737_0.678|GO:0016020_0.600|GO:0043226_0.594|GO:0043229_0.581|GO:0008150_0.547|GO:0043227_0.520|GO:0043231_0.505
|
IPR002314+2-148+|IPR002317+1-178_8-20_20-33_62-75_79-95_97-113+|IPR006195+1-157+|IPR045864+1-180_2-165+
|
— |
PF00587+2-148+tRNA_synthetase_class_II_core_domain_(G,_H,_P,_S_and_T)
|
— |
PTHR11778+1-178+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
184-190
|
1.000
|
1-183
|
8p7d_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.655
|
21912.180
|
7.578
|
3.000
|
28.947
|
11.053
|
48.947
|
51.053
|
15.789
|
13.158
|
45.789
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
289.147
|
736.692
|
506.607
|
305.411
|
239.651
|
232.174
|
225.961
|
501.649
|
298.359
|
10.692
|
133.978
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.770
|
-1.407
|
-0.621
|
-0.382
|
— | — |
1.009
|
-1.010
|
4.466
|
— |
4.388
|
5.442
|
— |
No JSON data available for plots.