Hg_chrom5_TN10mRNA_11175
Organism: Heterodera glycines Gene Locus: chr5:12441432-12445220 Feature type: polypeptideProtein Sequence
Length: 239
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.924 | 1.168 | 1.141 | 0.144 | 1.743 | 1.395 | 0.697 | 0.209 | 1.488 | 1.018 | 0.824 | 1.723 | 1.046 | 0.644 | 1.622 | 1.076 | 0.96 | 0.634 | 0.322 | 0.738 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10534
|
— | — |
1.667
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.794
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRYIVDQENRPEKDARR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.320
|
0.482
|
0.028
|
0.628
|
0.040
|
0.195
|
0.155
|
0.016
|
0.135
|
0.239
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002277
|
2.000
|
2.000
|
Hsc_gene_6212.t1;Hsc_gene_6212.t2
|
— | — |
G5EGS3.1 Kinesin-like protein klp-12 [Caenorhabditis elegans]
|
KAI3415961.1 Kinesin-like protein kif21b [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003777|GO:0005524|GO:0007018|GO:0008017
|
GO:0005575_0.915|GO:0110165_0.906|GO:0005622_0.856|GO:0008150_0.819|GO:0009987_0.773|GO:0043226_0.726|GO:0016020_0.696|GO:0043229_0.664|GO:0005737_0.660|GO:0043227_0.590|GO:0071840_0.579|GO:0016043_0.574|GO:0003674_0.526|GO:0071944_0.520
|
IPR001752+1-239_4-228_13-158+|IPR027417+13-157+|IPR027640+13-157+|IPR036961+8-221+
|
SM00129+4-228+
|
PF00225+13-158+Kinesin_motor_domain
|
— |
PTHR47969+13-157+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
162-239
|
1.000
|
1-161
|
7x4n_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.555
|
27037.270
|
4.709
|
-7.500
|
30.544
|
7.113
|
54.393
|
45.607
|
13.808
|
16.736
|
46.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
1057.282
|
1133.248
|
1468.096
|
1415.041
|
1444.189
|
1401.137
|
942.822
|
2157.444
|
1094.601
|
68.915
|
508.495
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.145
|
0.183
|
— | — | — |
-0.560
|
0.519
|
-1.051
|
— | — |
4.596
|
11.767
|
— |
No JSON data available for plots.