SCN Proteipedia

Hg_chrom5_TN10mRNA_11176

Organism: Heterodera glycines Gene Locus: chr5:12446005-12454301 Feature type: polypeptide

Protein Sequence

Length: 889

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.059	1.177	0.695	0.815	0.844	1.067	0.495	1.35	1.175	1.14	0.835	1.125	1.625	1.449	1.263	1.077	1.051	0.784	1.384	0.562	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10535	—	—	1.111	1.000	2.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.563

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRR,PKPS,RFSKRRQ	—	—	—	—	—	—	0.001	—	—	0.611	0.133	0.014	0.473	0.140	0.122	0.107	0.086	0.157	0.132

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001639	3.000	1.000	Hsc_gene_7633.t1	—	—	P34471.1 DNA primase small subunit [Caenorhabditis elegans]	KAF7635640.1 DNA primase [Meloidogyne graminicola]	No	-0.380

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.961\|GO:0009987_0.912\|GO:0005575_0.797\|GO:0110165_0.796\|GO:0008152_0.795\|GO:0044238_0.786\|GO:0044237_0.770\|GO:0009058_0.768\|GO:0043170_0.764\|GO:0003674_0.754\|GO:0044249_0.751\|GO:0009059_0.742\|GO:0016020_0.731\|GO:0006139_0.726\|GO:0034654_0.718\|GO:0090304_0.707\|GO:0141187_0.707\|GO:0005622_0.698\|GO:0006259_0.676\|GO:0006260_0.670\|GO:0006261_0.670\|GO:0071897_0.670\|GO:0043226_0.661\|GO:0043229_0.641\|GO:0043227_0.628\|GO:0043231_0.613\|GO:0003824_0.587\|GO:0016070_0.580\|GO:0032774_0.575\|GO:0016740_0.558\|GO:0006269_0.542\|GO:0016772_0.535\|GO:0140640_0.532\|GO:0003896_0.526\|GO:0003899_0.526\|GO:0016779_0.526\|GO:0034062_0.526\|GO:0097747_0.526\|GO:0140098_0.526\|GO:0006270_0.520	IPR008984+556-591+	—	—	—	PTHR10536+35-123+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	256-311;420-466	3.000	1-255;312-419;467-889	7uy8_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.887	99919.640	9.444	37.000	23.285	12.261	46.457	53.543	14.398	8.886	51.181

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	magenta	297.042	541.637	295.188	251.728	222.935	233.416	198.494	410.582	71.562	438.146	281.039

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.104	-1.243	—	-0.207	—	-0.223	0.714	-0.907	—	—	—	—	—

No JSON data available for plots.

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