Hg_chrom5_TN10mRNA_11177
Organism: Heterodera glycines Gene Locus: chr5:12454846-12456253 Feature type: polypeptideProtein Sequence
Length: 159
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 2.56 | 0.146 | 0.8 | 0.217 | 1.153 | 1.451 | 0.973 | 0.0 | 0.14 | 0.34 | 1.144 | 0.74 | 0.175 | 1.089 | 2.952 | 1.527 | 1.031 | 0.191 | 0.484 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10536
|
— | — |
2.556
|
5.000
|
1.000
|
1.000
|
3.000
|
1.000
|
5.000
|
2.000
|
3.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRSPAGTPSGGRRRRRCG,RRARSRKTKKRAASAGETKPLRRSARIAAQKAATEKAAKQKARDGSTASTKSAGRGRPSRSPKKSGPKSRRSPAGTPSGGRRRRR
|
11-40
|
0.979
|
— | — | — | — |
0.000
|
— | — |
0.884
|
0.031
|
0.064
|
0.238
|
0.013
|
0.009
|
0.036
|
0.002
|
0.047
|
0.327
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000710
|
5.000
|
1.000
|
Hsc_gene_19975.t1
|
Hsc_gene_1567.t1;Hsc_gene_1568.t1;Hsc_gene_19975.t1;Hsc_gene_20639.t1;Hsc_gene_2275.t1;Hsc_gene_23635.t1;Hsc_gene_5434.t1;Hsc_gene_9562.t1
|
— | — | — |
No
|
0.760
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-159
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.521
|
16699.430
|
11.827
|
17.000
|
33.333
|
1.258
|
56.604
|
43.396
|
22.013
|
11.321
|
59.748
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
1376.540
|
2916.762
|
1801.001
|
2090.381
|
1817.793
|
2423.352
|
822.468
|
1062.525
|
1561.185
|
1.119
|
669.719
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.924
|
-0.618
|
0.323
|
-0.234
|
0.430
|
-1.551
|
-1.295
|
-0.229
|
9.941
|
— |
9.511
|
12.236
|
— |
No JSON data available for plots.