Hg_chrom5_TN10mRNA_11178
Organism: Heterodera glycines Gene Locus: chr5:12466590-12467550 Feature type: polypeptideProtein Sequence
Length: 124
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.563 | 1.313 | 1.026 | 1.669 | 0.269 | 1.241 | 0.48 | 1.613 | 1.254 | 1.308 | 1.1 | 0.949 | 1.568 | 1.086 | 1.975 | 0.691 | 1.058 | 0.855 | 2.481 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10537
|
— | — |
2.111
|
3.000
|
2.000
|
2.000
|
1.000
|
1.000
|
5.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.825
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus|mitochondrion
|
— |
RKKK,RRAKMDNRNDCFAKIWRKK
|
— | — |
49-70
|
0.999
|
— | — |
0.000
|
— | — |
0.518
|
0.688
|
0.016
|
0.370
|
0.050
|
0.037
|
0.035
|
0.149
|
0.106
|
0.377
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000152
|
1.000
|
12.000
|
Hsc_gene_13194.t1;Hsc_gene_13767.t1;Hsc_gene_14033.t1;Hsc_gene_14082.t1;Hsc_gene_15930.t1;Hsc_gene_16185.t1;Hsc_gene_19594.t2;Hsc_gene_20502.t1;Hsc_gene_23780.t1;Hsc_gene_23780.t2;Hsc_gene_26271.t1;Hsc_gene_9460.t1
|
— | — | — | — |
MCJ1325961
|
0.390
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-124
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.639
|
14448.880
|
10.851
|
14.000
|
27.419
|
12.097
|
49.194
|
50.806
|
20.161
|
7.258
|
47.581
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
49.574
|
107.399
|
50.500
|
74.179
|
66.617
|
61.031
|
38.142
|
155.334
|
12.582
|
0.000
|
5.392
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.319
|
-0.670
|
0.664
|
— | — |
-0.666
|
1.248
|
-1.884
|
— | — | — | — | — |
No JSON data available for plots.