Hg_chrom5_TN10mRNA_11179
Organism: Heterodera glycines Gene Locus: chr5:12467749-12469273 Feature type: polypeptideProtein Sequence
Length: 369
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.977 | 0.756 | 0.887 | 1.308 | 0.768 | 1.251 | 0.968 | 1.22 | 1.506 | 1.099 | 0.78 | 1.116 | 2.033 | 0.625 | 1.825 | 0.813 | 0.711 | 0.862 | 0.208 | 0.638 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10538
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
17-38
|
0.973
|
— | — | — | — |
0.001
|
— | — |
0.292
|
0.308
|
0.176
|
0.493
|
0.170
|
0.079
|
0.194
|
0.053
|
0.064
|
0.616
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004272
|
2.000
|
1.000
|
Hsc_gene_18857.t1
|
Hsc_gene_15879.t1
|
— |
Q8IW45.1 ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Homo sapiens]
|
KAF7639632.1 ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Meloidogyne graminicola]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016836
|
GO:0005575_0.779|GO:0110165_0.772|GO:0005622_0.686|GO:0003674_0.648|GO:0008150_0.607|GO:0005737_0.606|GO:0009987_0.536|GO:0016020_0.524|GO:0003824_0.518
|
IPR000631+81-369_100-319_108-318_109-317_109-369+|IPR029056+100-345_109-323+
|
— |
PF01256+109-317+Carbohydrate_kinase
|
— |
PTHR12592+109-319+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-369
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
41443.890
|
9.594
|
21.500
|
26.016
|
12.195
|
44.173
|
55.827
|
16.531
|
9.485
|
47.425
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkturquoise
|
158.001
|
206.666
|
111.880
|
120.508
|
125.331
|
98.192
|
78.740
|
115.702
|
303.145
|
142.512
|
211.355
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.115
|
-0.916
|
— | — |
-0.338
|
— | — |
-0.411
|
— | — | — | — | — |
No JSON data available for plots.