Hg_chrom5_TN10mRNA_11180
Organism: Heterodera glycines Gene Locus: chr5:12469352-12472326 Feature type: polypeptideProtein Sequence
Length: 730
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.844 | 1.497 | 0.996 | 1.134 | 1.096 | 1.194 | 0.473 | 1.164 | 1.065 | 0.852 | 0.83 | 1.612 | 1.446 | 0.817 | 2.404 | 1.057 | 0.808 | 0.56 | 1.054 | 0.604 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10539
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRSSDDPNSRRERGR,KRCPRCLRRKARRKAG,RRERGRGERADRDRPRER,RRKAGWKRIRGTRRKKRTD,RRKARRKAGWKRIRGTRRKKRT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.457
|
0.083
|
0.014
|
0.376
|
0.117
|
0.124
|
0.071
|
0.010
|
0.271
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000887
|
5.000
|
1.000
|
Hsc_gene_18856.t2
|
— | — |
O01738.2 Differentially expressed in FDCP 8 homolog [Caenorhabditis elegans]
|
KAI1717297.1 putative zinc-RING and/or ribbon domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.954|GO:0009987_0.913|GO:0071840_0.698|GO:0016043_0.684|GO:0005575_0.658|GO:0110165_0.658|GO:0065007_0.650|GO:0050789_0.641|GO:0050794_0.627|GO:0005622_0.596|GO:0016020_0.567|GO:0051179_0.555|GO:0043226_0.553|GO:0043229_0.544
|
IPR025258+526-660_526-701+|IPR051366+662-707+
|
SM01175+526-701+
|
PF13901+526-660+Rubicon_Homology_Domain
|
— |
PTHR12326+662-707+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
157-362
|
2.000
|
1-156;363-730
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.738
|
85047.380
|
10.061
|
46.500
|
31.644
|
10.959
|
55.068
|
44.932
|
19.589
|
12.055
|
46.712
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
873.484
|
2463.210
|
1155.896
|
1183.032
|
735.658
|
663.809
|
462.170
|
1387.261
|
803.256
|
199.913
|
458.489
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.321
|
-1.195
|
0.142
|
-0.717
|
— |
-0.511
|
0.963
|
-1.444
|
— | — | — | — | — |
No JSON data available for plots.