Hg_chrom5_TN10mRNA_11182
Organism: Heterodera glycines Gene Locus: chr5:12477199-12479465 Feature type: polypeptideProtein Sequence
Length: 380
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.796 | 0.612 | 0.431 | 0.817 | 1.053 | 1.282 | 0.564 | 1.842 | 0.76 | 2.418 | 0.518 | 1.084 | 2.047 | 1.113 | 0.967 | 1.353 | 0.69 | 0.718 | 1.012 | 0.542 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10541
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
KKHRPFDWPSEYGTRLSRR
|
— | — | — | — | — |
0.629
|
0.035
|
0.000
|
— |
0.494
|
0.371
|
0.020
|
0.544
|
0.479
|
0.212
|
0.234
|
0.133
|
0.052
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000589
|
7.000
|
0.000
|
0.000
|
— | — |
Q6NV12.1 Sodium-dependent phosphate transporter 1-A [Danio rerio]
|
MCP9266508.1 S20AA [Dirofilaria immitis]
|
No
|
-0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005315|GO:0006817|GO:0016020
|
GO:0008150_0.957|GO:0005575_0.576|GO:0110165_0.576|GO:0032502_0.564|GO:0048856_0.564|GO:0016020_0.539
|
IPR001204+27-67+
|
— |
PF01384+27-67+Phosphate_transporter_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-380
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.676
|
42880.910
|
7.131
|
5.000
|
20.526
|
14.211
|
41.842
|
58.158
|
11.842
|
8.684
|
43.158
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
13.625
|
32.578
|
18.692
|
16.692
|
9.149
|
9.984
|
20.386
|
35.890
|
0.514
|
5.460
|
3.340
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.038
|
-1.103
|
— |
-0.898
|
— |
1.039
|
1.755
|
— | — |
4.434
|
— | — | — |