Hg_chrom5_TN10mRNA_11184
Organism: Heterodera glycines Gene Locus: chr5:12511301-12518981 Feature type: polypeptideProtein Sequence
Length: 1,053
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.905 | 0.883 | 1.071 | 0.819 | 1.092 | 1.388 | 0.633 | 1.662 | 0.865 | 1.463 | 0.719 | 1.229 | 1.266 | 1.023 | 1.764 | 0.963 | 0.919 | 0.705 | 0.804 | 0.419 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10543
|
— | — |
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
chloroplast
|
KRSSDDPNSRRERGR,SRRERGRGERADRDRPRERERDRGTNRSRS
|
— | — |
4-26
|
0.999
|
— |
0.767
|
0.268
|
0.000
|
— |
0.752
|
0.093
|
0.009
|
0.354
|
0.081
|
0.043
|
0.030
|
0.005
|
0.079
|
0.163
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000589
|
7.000
|
0.000
|
0.000
|
Hsc_gene_10774.t1;Hsc_gene_18834.t1
|
— | — |
KAF7636077.1 RRM domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+561-583_563-583_589-611_591-611+|IPR036236+559-611+
|
SM00355+561-583_589-611+
|
PF00096+561-583+Zinc_finger,_C2H2_type
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
769-966
|
2.000
|
1-768;967-1053
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
119383.820
|
8.276
|
27.500
|
29.155
|
10.351
|
50.712
|
49.288
|
16.714
|
12.441
|
47.483
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
778.219
|
988.139
|
489.031
|
500.938
|
424.424
|
384.756
|
275.163
|
459.008
|
2451.333
|
245.662
|
1190.950
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.246
|
-1.117
|
0.144
|
-0.270
|
— |
-0.473
|
— |
-0.597
|
3.258
|
— | — |
3.334
|
— |