Hg_chrom5_TN10mRNA_11188
Organism: Heterodera glycines Gene Locus: chr5:12526864-12529752 Feature type: polypeptideProtein Sequence
Length: 312
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.634 | 1.789 | 1.166 | 0.332 | 0.962 | 1.068 | 0.801 | 0.481 | 1.567 | 1.473 | 0.583 | 1.508 | 2.315 | 0.863 | 1.047 | 0.778 | 0.578 | 0.971 | 0.74 | 0.943 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10546
|
— | — |
1.778
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
cytoplasm
|
— | — | — | — | — | — |
1-26
|
0.866
|
0.897
|
0.000
|
0.000
|
0.259
|
0.229
|
0.025
|
0.506
|
0.591
|
0.216
|
0.378
|
0.051
|
0.095
|
0.580
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004273
|
2.000
|
1.000
|
Hsc_gene_23359.t1
|
Hsc_gene_23359.t1
|
— |
Q20679.1 Multifunctional procollagen lysine hydroxylase and glycosyltransferase [Caenorhabditis elegans]
|
KAH7723081.1 Oxoglutarate/iron-dependent dioxygenase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.884|GO:0009987_0.753|GO:0003674_0.683|GO:0005575_0.643|GO:0110165_0.635|GO:0003824_0.580|GO:0008152_0.537|GO:0016020_0.528|GO:0044238_0.518|GO:0005622_0.514|GO:0005737_0.507
|
IPR050757+62-273+
|
— | — | — |
PTHR10730+62-273+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
306-312
|
1.000
|
1-305
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.551
|
35550.640
|
4.651
|
-8.500
|
22.115
|
13.462
|
42.949
|
57.051
|
9.936
|
12.179
|
47.115
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
594.788
|
352.745
|
496.265
|
762.514
|
775.807
|
848.651
|
590.700
|
522.267
|
327.405
|
725.787
|
555.052
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.264
|
0.975
|
0.728
|
— | — |
-0.516
|
-0.806
|
0.318
|
— | — | — | — | — |