Hg_chrom5_TN10mRNA_11189
Organism: Heterodera glycines Gene Locus: chr5:12530049-12531379 Feature type: polypeptideProtein Sequence
Length: 111
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.524 | 0.838 | 1.31 | 0.621 | 1.802 | 1.155 | 0.858 | 0.45 | 2.002 | 0.609 | 0.956 | 2.12 | 1.001 | 0.693 | 2.022 | 0.772 | 1.182 | 0.546 | 1.386 | 0.265 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10547
|
— | — |
1.667
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.471
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.379
|
0.527
|
0.025
|
0.522
|
0.091
|
0.045
|
0.063
|
0.038
|
0.142
|
0.294
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010168
|
2.000
|
0.000
|
0.000
|
— | — |
Q19020.1 Dynein heavy chain, cytoplasmic [Caenorhabditis elegans]
|
KHN74643.1 Dynein heavy chain, cytoplasmic [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.921|GO:0110165_0.911|GO:0008150_0.902|GO:0009987_0.839|GO:0005622_0.824|GO:0043226_0.773|GO:0005737_0.758|GO:0043229_0.756|GO:0016020_0.718|GO:0071944_0.676|GO:0043228_0.641|GO:0043232_0.637|GO:0065007_0.631|GO:0071840_0.630|GO:0016043_0.622|GO:0050789_0.617|GO:0005886_0.586|GO:0006996_0.583|GO:0007017_0.564|GO:0003674_0.558|GO:0043227_0.556|GO:0005856_0.549|GO:0043231_0.546|GO:0048518_0.538
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
38-111
|
1.000
|
1-37
|
3wuq_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.513
|
12818.470
|
5.288
|
-1.500
|
35.135
|
7.207
|
55.856
|
44.144
|
17.117
|
18.018
|
44.144
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
brown
|
509.549
|
345.740
|
710.214
|
909.800
|
882.415
|
703.494
|
470.919
|
663.385
|
598.189
|
23.399
|
269.738
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.810
|
1.259
|
0.466
|
— |
-0.312
|
-0.568
|
— | — |
4.699
|
— |
5.635
|
— | — |
No JSON data available for plots.