Hg_chrom5_TN10mRNA_11190
Organism: Heterodera glycines Gene Locus: chr5:12531258-12533289 Feature type: polypeptideProtein Sequence
Length: 178
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.849 | 0.653 | 0.817 | 0.969 | 0.655 | 1.873 | 1.204 | 3.09 | 0.624 | 1.063 | 0.681 | 0.661 | 2.029 | 1.296 | 2.064 | 0.562 | 0.737 | 0.851 | 0.0 | 0.165 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10548
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRFCKARQMRGKRRPF,RRRLPEIVGPFGFDRRFCK
|
— | — |
32-106
|
0.992
|
— | — |
0.000
|
— | — |
0.438
|
0.308
|
0.015
|
0.471
|
0.088
|
0.057
|
0.144
|
0.073
|
0.057
|
0.452
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002278
|
2.000
|
2.000
|
Hsc_gene_8640.t1;Hsc_gene_8640.t2
|
Hsc_gene_8639.t1
|
— | — |
KAI0267554.1 hypothetical protein BGY98DRAFT_1180773, partial [Russula aff. rugulosa BPL654]
|
OWT39610
|
0.410
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
144-178
|
1.000
|
1-143
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.728
|
19954.720
|
10.772
|
16.500
|
29.213
|
14.045
|
47.753
|
52.247
|
20.787
|
8.427
|
48.315
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
237.528
|
866.177
|
321.042
|
329.703
|
235.392
|
208.097
|
127.213
|
190.532
|
246.502
|
0.000
|
105.644
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.662
|
-1.531
|
0.147
|
-0.518
|
— |
-0.702
|
— |
-0.442
|
7.000
|
— |
7.272
|
— | — |
No JSON data available for plots.