Hg_chrom5_TN10mRNA_11191
Organism: Heterodera glycines Gene Locus: chr5:12538252-12544733 Feature type: polypeptideProtein Sequence
Length: 762
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.809 | 1.526 | 1.002 | 0.317 | 1.619 | 1.75 | 0.609 | 1.575 | 0.875 | 1.224 | 0.895 | 1.853 | 1.13 | 0.732 | 1.661 | 0.506 | 0.839 | 0.696 | 0.909 | 0.811 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10549
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.900
|
0.132
|
0.002
|
0.316
|
0.127
|
0.049
|
0.017
|
0.000
|
0.053
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004274
|
1.000
|
2.000
|
Hsc_gene_12381.t1;Hsc_gene_8639.t1
|
— | — |
Q18237.2 Structural maintenance of chromosomes protein 5 [Caenorhabditis elegans]
|
KAH7726414.1 Protein SMC-5 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
|
GO:0005575_0.884|GO:0110165_0.873|GO:0008150_0.861|GO:0005622_0.823|GO:0009987_0.819|GO:0016020_0.722|GO:0043226_0.696|GO:0043229_0.671|GO:0043227_0.622|GO:0071840_0.621|GO:0016043_0.616|GO:0003674_0.615|GO:0043231_0.593|GO:0007049_0.590|GO:0022402_0.590|GO:0043228_0.573|GO:0043232_0.573|GO:0006996_0.554|GO:0005634_0.545|GO:0050896_0.509|GO:0008152_0.505|GO:0032991_0.505|GO:0043170_0.505|GO:0044238_0.505
|
IPR027131+472-716+|IPR027417+493-659_507-697+
|
— | — | — |
PTHR45916+472-716+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-151;373-527;692-762
|
2.000
|
152-372;528-691
|
8i4x_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.496
|
88828.020
|
6.720
|
3.000
|
32.415
|
11.155
|
54.462
|
45.538
|
17.192
|
15.223
|
42.126
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
steelblue
|
3374.717
|
8303.835
|
4176.363
|
4031.521
|
3250.852
|
2935.433
|
2870.474
|
3314.750
|
4119.420
|
843.612
|
2247.530
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.222
|
-1.180
|
— |
-0.342
|
-0.133
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.