Hg_chrom5_TN10mRNA_8894
Organism: Heterodera glycines Gene Locus: chr5:22571-26310 Feature type: polypeptideProtein Sequence
Length: 332
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.016 | 0.841 | 0.931 | 0.623 | 1.004 | 1.313 | 0.789 | 0.904 | 1.205 | 0.895 | 1.004 | 1.772 | 1.673 | 0.869 | 0.861 | 1.033 | 0.741 | 1.141 | 1.158 | 1.152 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8359
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.116
|
— | — |
0.589
|
0.175
|
0.028
|
0.452
|
0.273
|
0.111
|
0.164
|
0.014
|
0.049
|
0.115
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003981
|
2.000
|
1.000
|
Hsc_gene_14489.t1
|
Hsc_gene_14489.t1;Hsc_gene_2187.t1
|
— |
Q9XZ58.1 COP9 signalosome complex subunit 5 [Drosophila melanogaster]
|
KAI3413263.1 COP9 signalosome complex subunit 5 [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0008233|GO:0008237
|
GO:0008150_0.901|GO:0005575_0.709|GO:0110165_0.701|GO:0005622_0.614|GO:0016020_0.604|GO:0009987_0.600|GO:0008152_0.587|GO:0044238_0.569|GO:0043226_0.539|GO:0043170_0.534|GO:0043229_0.529|GO:0003674_0.528|GO:0043227_0.507
|
IPR000555+43-155_46-183+|IPR037518+47-184+|IPR040961+245-309+|IPR050242+19-261+
|
SM00232+46-183+
|
PF01398+43-155+JAB1/Mov34/MPN/PAD-1_ubiquitin_protease|PF18323+245-309+Cop9_signalosome_subunit_5_C-terminal_domain
|
G3DSA:3.40.140.10:FF:000003+8-249+COP9_signalosome_complex_subunit_5
|
PTHR10410+19-261+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-332
|
9is6_E
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
37244.570
|
7.012
|
2.000
|
23.795
|
13.253
|
44.277
|
55.723
|
12.651
|
11.145
|
49.699
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
224.562
|
152.641
|
138.611
|
136.907
|
157.147
|
141.047
|
342.785
|
199.061
|
187.206
|
366.481
|
289.649
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.368
|
-0.294
|
— | — | — |
1.293
|
0.390
|
0.929
|
— | — | — | — | — |
No JSON data available for plots.