Hg_chrom5_TN10mRNA_8902
Organism: Heterodera glycines Gene Locus: chr5:47857-51317 Feature type: polypeptideProtein Sequence
Length: 464
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.601 | 1.353 | 0.549 | 0.372 | 1.437 | 0.939 | 0.872 | 0.97 | 1.676 | 1.456 | 1.502 | 1.648 | 1.437 | 0.746 | 1.1 | 0.677 | 0.707 | 0.718 | 0.497 | 1.014 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8367
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom5_TN10mRNA_8902
|
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
nucleus
|
nucleus
|
KKVIEEQQMEIARKEKP,RKEKPGKTRRLRNELIGGKAKHPSK
|
— | — | — | — |
1-19
|
0.990
|
1.000
|
0.000
|
0.000
|
0.440
|
0.269
|
0.009
|
0.421
|
0.249
|
0.105
|
0.196
|
0.044
|
0.219
|
0.297
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003985
|
2.000
|
1.000
|
Hsc_gene_14481.t1
|
Hsc_gene_14481.t1
|
— |
P75524.1 Putative serine/threonine-protein kinase [Mycoplasmoides pneumoniae M129]
|
KAI3420120.1 Calcium-dependent protein kinase 4, variant 2 [Globodera pallida]
|
XP_025013997
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.799|GO:0009987_0.724|GO:0005575_0.723|GO:0110165_0.717|GO:0003674_0.683|GO:0005622_0.663|GO:0043226_0.586|GO:0016020_0.575|GO:0043229_0.557|GO:0003824_0.552|GO:0065007_0.524|GO:0016740_0.511|GO:0050789_0.504
|
IPR000719+52-372_61-362_76-360+|IPR011009+71-364+
|
SM00220+61-362+
|
PF00069+76-360+Protein_kinase_domain
|
— |
PTHR44167+77-361+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-464
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.812
|
53141.800
|
9.890
|
21.500
|
28.879
|
11.207
|
47.414
|
52.586
|
17.241
|
11.638
|
40.086
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
107.751
|
0.926
|
15.355
|
39.401
|
15.764
|
4.992
|
3.445
|
2.748
|
412.589
|
130.984
|
251.672
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.824
|
5.285
|
1.472
|
-1.350
|
-1.644
|
— | — | — | — | — | — | — | — |