SCN Proteipedia

Hg_chrom5_TN10mRNA_8904

Organism: Heterodera glycines Gene Locus: chr5:61546-67483 Feature type: polypeptide

Protein Sequence

Length: 531 (Signal peptide: 1-20)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.832	1.226	0.856	0.52	1.287	1.352	0.673	1.13	1.507	0.967	1.141	1.994	1.831	0.905	0.884	0.861	0.741	0.942	0.579	0.72	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8369	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	Yes	—	—	—	—	Hg_chrom5_TN10mRNA_8904	21-pJ2_J3	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	1-20	0.968	0.999	0.000	0.000	0.532	0.263	0.070	0.700	0.172	0.149	0.100	0.006	0.148	0.259

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000868	5.000	1.000	Hsc_gene_1683.t1	Hsc_gene_10507.t1;Hsc_gene_10507.t2;Hsc_gene_24300.t1	—	Q5EAC2.1 Glutathione synthetase [Bos taurus]	5OEU_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEU_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEV_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_B Chain B, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_D Chain D, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida]	No	-0.050

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004363\|GO:0005524\|GO:0006750\|GO:0016874	GO:0008150_0.943\|GO:0003674_0.868\|GO:0008152_0.803\|GO:0009987_0.736\|GO:0005575_0.668\|GO:0110165_0.662\|GO:0050896_0.650\|GO:0044237_0.636\|GO:0009058_0.624\|GO:0003824_0.617\|GO:0044249_0.611\|GO:0006790_0.538\|GO:0006518_0.534\|GO:0006575_0.534\|GO:0006749_0.534\|GO:0006750_0.534\|GO:0019184_0.534\|GO:0042398_0.534\|GO:0043043_0.534\|GO:0043603_0.534\|GO:0043604_0.534\|GO:0044272_0.534\|GO:0016874_0.522\|GO:0005488_0.521\|GO:0004363_0.518\|GO:0016879_0.518\|GO:0016881_0.518\|GO:1904091_0.518\|GO:0005622_0.501	IPR005615+28-531_42-531_55-530+\|IPR014042+112-388+\|IPR014049+52-472+\|IPR014709+389-459+\|IPR037013+228-352+	—	PF03917+55-530+Eukaryotic_glutathione_synthase,_ATP_binding_domain	—	PTHR11130+42-531+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-531	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.640	60239.070	6.915	3.000	26.554	12.053	47.646	52.354	14.124	12.429	45.763

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	purple	65.528	3.702	15.227	173.795	123.883	25.248	43.800	6.605	19.350	125.075	79.764

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.812	5.425	3.625	-0.520	-2.281	0.805	-2.041	2.870	—	—	—	—	—

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