Hg_chrom5_TN10mRNA_8911
Organism: Heterodera glycines Gene Locus: chr5:110402-111631 Feature type: polypeptideProtein Sequence
Length: 301
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.966 | 1.004 | 0.362 | 1.031 | 0.166 | 2.556 | 2.333 | 0.332 | 0.517 | 0.584 | 0.453 | 0.977 | 0.369 | 4.217 | 0.678 | 0.854 | 0.381 | 0.604 | 0.256 | 0.195 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8376
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.811
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — |
64-87
|
0.995
|
— | — |
0.078
|
— | — |
0.059
|
0.085
|
0.009
|
0.097
|
0.394
|
0.183
|
0.261
|
0.004
|
0.642
|
0.313
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000579
|
5.000
|
2.000
|
Hsc_gene_10517.t1;Hsc_gene_1621.t1
|
Hsc_gene_10517.t1;Hsc_gene_1621.t1;Hsc_gene_1663.t1;Hsc_gene_1677.t1
|
— |
A8XV36.1 Cuticle collagen 144 [Caenorhabditis briggsae]
|
CAB88203.1 putative cuticular collagen [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+8-58_10-58+|IPR008160+149-207_217-275+|IPR050632+14-286+
|
SM01088+8-58+
|
PF01391+149-207_217-275+Collagen_triple_helix_repeat_(20_copies)|PF01484+10-58+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+14-286+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
36-301
|
1.000
|
1-35
|
9han_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
29379.030
|
9.497
|
11.000
|
9.967
|
2.990
|
32.558
|
67.442
|
6.977
|
2.990
|
71.429
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
white
|
3009.867
|
4.926
|
3.366
|
0.886
|
28.004
|
34850.728
|
115.999
|
111.200
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-2.617
|
— |
4.964
|
10.297
|
-8.219
|
-8.418
|
— | — | — | — | — | — |
No JSON data available for plots.