Hg_chrom5_TN10mRNA_8912
Organism: Heterodera glycines Gene Locus: chr5:112209-114570 Feature type: polypeptideProtein Sequence
Length: 486
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.502 | 2.105 | 1.01 | 0.71 | 1.235 | 1.425 | 0.416 | 1.337 | 2.012 | 1.168 | 1.309 | 1.452 | 1.829 | 0.791 | 0.546 | 0.588 | 0.776 | 0.717 | 0.317 | 1.089 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8377
|
— | — |
1.111
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-21
|
0.999
|
0.999
|
0.000
|
0.000
|
0.567
|
0.289
|
0.011
|
0.598
|
0.161
|
0.307
|
0.165
|
0.024
|
0.144
|
0.165
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002154
|
3.000
|
1.000
|
Hsc_gene_1676.t1
|
— | — | — |
KAI3410492.1 hypothetical protein GPALN_004593 [Globodera pallida]
|
KZV16584
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.951|GO:0009987_0.890|GO:0008152_0.798|GO:0050896_0.785|GO:0044238_0.781|GO:0044237_0.774|GO:0006950_0.732|GO:0042221_0.724|GO:0009628_0.702|GO:0044281_0.698|GO:1901700_0.698|GO:0009719_0.689|GO:0006629_0.683|GO:0009725_0.683|GO:0006082_0.681|GO:0033993_0.681|GO:0043436_0.681|GO:0019752_0.680|GO:0044255_0.680|GO:0006970_0.678|GO:1901615_0.678|GO:0032787_0.677|GO:0006066_0.676|GO:0006720_0.674|GO:0009651_0.674|GO:0006714_0.670|GO:0006721_0.670|GO:0009687_0.670|GO:0009739_0.670|GO:0043288_0.670|GO:0120254_0.670|GO:1902644_0.670
|
IPR001841+273-320_275-320+|IPR013083+261-334+
|
— |
PF13639+273-320+Ring_finger_domain
|
— |
PTHR45977+173-324+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-486
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.527
|
56558.800
|
6.322
|
-1.500
|
26.955
|
13.374
|
50.412
|
49.588
|
13.992
|
12.963
|
42.181
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
3.601
|
1.808
|
6.115
|
5.870
|
1.268
|
0.881
|
0.101
|
0.000
|
2.747
|
7.678
|
5.565
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.528
|
— | — |
-2.259
|
— | — | — | — | — | — | — | — | — |