Hg_chrom5_TN10mRNA_8920
Organism: Heterodera glycines Gene Locus: chr5:182159-186249 Feature type: polypeptideProtein Sequence
Length: 447
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.832 | 0.832 | 0.285 | 0.771 | 0.447 | 0.688 | 0.906 | 1.23 | 2.287 | 1.753 | 0.373 | 1.842 | 2.237 | 0.688 | 0.867 | 1.023 | 1.21 | 1.051 | 1.033 | 0.724 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8385
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
11-31
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.096
|
0.133
|
0.018
|
0.118
|
0.289
|
0.241
|
0.284
|
0.070
|
0.668
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000358
|
4.000
|
4.000
|
Hsc_gene_15692.t1;Hsc_gene_8634.t1;Hsc_gene_8634.t2;Hsc_gene_8634.t3
|
Hsc_gene_15692.t1;Hsc_gene_25681.t1
|
— |
Q03567.2 Uncharacterized transporter slc-17.2 [Caenorhabditis elegans]
|
KAH7722014.1 Protein T19D12.9 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.941|GO:0009987_0.896|GO:0006810_0.855|GO:0051179_0.855|GO:0051234_0.855|GO:0003674_0.850|GO:0055085_0.837|GO:0005215_0.801|GO:0022857_0.801|GO:0005575_0.785|GO:0110165_0.779|GO:0016020_0.749|GO:0071944_0.684|GO:0005886_0.670|GO:0015711_0.562
|
IPR011701+62-366+|IPR020846+20-447+|IPR036259+10-225_11-441_246-446+
|
— |
PF07690+62-366+Major_Facilitator_Superfamily
|
— |
PTHR45757+12-441+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-447
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
49433.750
|
9.230
|
16.500
|
13.423
|
14.318
|
34.228
|
65.772
|
9.172
|
4.251
|
47.204
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
227.198
|
0.464
|
1.613
|
2.865
|
7.696
|
3.529
|
19.444
|
0.547
|
3.278
|
977.974
|
560.247
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.497
|
— |
1.395
|
— |
2.464
|
— |
5.279
|
-8.367
|
— |
-6.585
|
— | — |
No JSON data available for plots.