Hg_chrom5_TN10mRNA_8922
Organism: Heterodera glycines Gene Locus: chr5:202569-224697 Feature type: polypeptideProtein Sequence
Length: 608
(Signal peptide: 1-34)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.497 | 1.186 | 0.598 | 0.113 | 1.453 | 1.139 | 0.587 | 0.987 | 0.768 | 1.178 | 1.869 | 1.161 | 1.005 | 0.854 | 1.208 | 2.021 | 0.836 | 0.797 | 0.38 | 0.435 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8387
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KKDRLSMSEEKKKDL,KKKDLLSMLEKKKNKE,KKKGFLRTASSLFTNSKKK,KKGFLRTASSLFTNSKKKS
|
— | — | — | — |
1-34
|
— |
0.601
|
— |
0.000
|
0.459
|
0.149
|
0.019
|
0.584
|
0.126
|
0.128
|
0.164
|
0.011
|
0.416
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002156
|
2.000
|
2.000
|
Hsc_gene_14435.t1;Hsc_gene_17382.t1
|
— | — | — | — |
MBK6605656
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
130-185;226-608
|
2.000
|
1-129;186-225
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.856
|
68437.630
|
10.572
|
44.000
|
32.237
|
7.566
|
61.020
|
38.980
|
20.230
|
12.007
|
46.875
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
971.692
|
2.593
|
297.935
|
198.257
|
30.783
|
3.242
|
4.342
|
5.011
|
4560.465
|
627.494
|
2313.053
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.611
|
6.115
|
-0.480
|
-2.723
|
-3.228
|
— | — | — |
2.772
|
-4.356
|
-4.070
|
— | — |