Hg_chrom5_TN10mRNA_8925
Organism: Heterodera glycines Gene Locus: chr5:234273-238589 Feature type: polypeptideProtein Sequence
Length: 518
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.943 | 0.898 | 0.562 | 0.799 | 0.579 | 0.693 | 0.666 | 0.386 | 2.016 | 1.748 | 0.468 | 2.498 | 1.984 | 0.928 | 0.709 | 1.213 | 0.854 | 1.024 | 1.485 | 0.852 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8390
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.127
|
0.160
|
0.047
|
0.147
|
0.294
|
0.357
|
0.234
|
0.185
|
0.513
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009071
|
1.000
|
1.000
|
Hsc_gene_17381.t1
|
Hsc_gene_14433.t1;Hsc_gene_17381.t1
|
— |
Q10917.3 Putative transporter B0252.3 [Caenorhabditis elegans]
|
KAI1728921.1 sugar transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.959|GO:0009987_0.907|GO:0006810_0.811|GO:0051179_0.811|GO:0051234_0.811|GO:0005575_0.775|GO:0110165_0.775|GO:0003674_0.774|GO:0055085_0.764|GO:0016020_0.746|GO:0005215_0.714|GO:0022857_0.714|GO:0005886_0.708|GO:0071944_0.708|GO:0043226_0.504
|
IPR005828+107-516+|IPR020846+50-513+|IPR036259+47-518_98-517+
|
— |
PF00083+107-516+Sugar_(and_other)_transporter
|
— |
PTHR24064+41-516+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-518
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
57548.170
|
7.122
|
2.000
|
13.900
|
12.741
|
34.170
|
65.830
|
7.336
|
6.564
|
48.263
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
398.696
|
37.158
|
323.892
|
247.867
|
193.113
|
274.103
|
449.627
|
382.603
|
52.417
|
989.346
|
587.805
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.896
|
2.600
|
-0.278
|
-0.393
|
0.521
|
0.723
|
— | — |
-4.347
|
— | — | — | — |
No JSON data available for plots.