Hg_chrom5_TN10mRNA_8929
Organism: Heterodera glycines Gene Locus: chr5:256390-257772 Feature type: polypeptideProtein Sequence
Length: 112
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 0.415 | 1.623 | 0.308 | 0.893 | 1.603 | 0.531 | 3.571 | 1.389 | 0.965 | 1.218 | 1.05 | 0.744 | 0.687 | 0.911 | 0.893 | 0.878 | 1.488 | 1.374 | 0.263 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8394
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.615
|
0.507
|
0.072
|
0.558
|
0.107
|
0.116
|
0.060
|
0.013
|
0.181
|
0.229
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009073
|
1.000
|
1.000
|
Hsc_gene_14441.t1
|
Hsc_gene_14441.t1
|
— |
P34328.1 Heat shock protein Hsp-12.2 [Caenorhabditis elegans]
|
KAF7633630.1 SHSP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.878|GO:0110165_0.876|GO:0005622_0.803|GO:0008150_0.772|GO:0005737_0.735|GO:0003674_0.655|GO:0009987_0.653|GO:0005488_0.581|GO:0065007_0.579|GO:0050789_0.576|GO:0043226_0.560|GO:0005515_0.550|GO:0050896_0.544|GO:0043229_0.540|GO:0016020_0.525|GO:0050794_0.518
|
IPR001436+9-111_30-50_52-65_67-86_89-110+|IPR002068+17-112_29-111+|IPR008978+16-110_20-112+
|
— |
PF00011+29-111+Hsp20/alpha_crystallin_family
|
— |
PTHR45640+9-111+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-112
|
3j07_X
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.655
|
12689.390
|
6.917
|
2.000
|
33.929
|
12.500
|
53.571
|
46.429
|
19.643
|
14.286
|
48.214
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
538.746
|
70.354
|
306.325
|
599.096
|
364.127
|
124.783
|
59.422
|
141.719
|
549.370
|
1320.302
|
989.902
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.891
|
2.952
|
1.078
|
-0.749
|
-1.531
|
-1.062
|
— |
-1.116
|
— | — | — |
-6.685
|
— |
No JSON data available for plots.