Hg_chrom5_TN10mRNA_8930
Organism: Heterodera glycines Gene Locus: chr5:258210-260659 Feature type: polypeptideProtein Sequence
Length: 240
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.388 | 1.066 | 0.833 | 1.293 | 1.25 | 1.603 | 0.446 | 3.542 | 1.481 | 0.957 | 0.694 | 0.735 | 1.62 | 1.282 | 1.19 | 0.595 | 0.751 | 1.073 | 0.321 | 1.471 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8395
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
RHRR
|
— | — | — | — |
1-24
|
0.976
|
1.000
|
0.000
|
0.000
|
0.257
|
0.369
|
0.047
|
0.181
|
0.070
|
0.036
|
0.041
|
0.017
|
0.190
|
0.904
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009074
|
1.000
|
1.000
|
Hsc_gene_14442.t1
|
Hsc_gene_14442.t1
|
— |
Q22687.2 Interleukin cytokine-related protein 17.1 [Caenorhabditis elegans]
|
KAI1725667.1 interleukin-17 domain-containing protein [Ditylenchus destructor]
|
No
|
0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005125|GO:0005576
|
GO:0008150_0.942|GO:0065007_0.874|GO:0005575_0.865|GO:0110165_0.865|GO:0050789_0.859|GO:0050896_0.821|GO:0048518_0.773|GO:0009628_0.698|GO:0040011_0.680|GO:0040012_0.677|GO:0040017_0.676|GO:0070482_0.676|GO:0005576_0.618
|
IPR010345+149-220+|IPR029034+114-224_134-221+
|
— |
PF06083+149-220+Interleukin-17
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-240
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.529
|
28278.150
|
6.951
|
4.500
|
29.583
|
18.333
|
49.167
|
50.833
|
17.500
|
12.083
|
42.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
361.771
|
109.110
|
270.511
|
145.371
|
193.049
|
294.690
|
262.127
|
693.682
|
0.000
|
844.546
|
482.598
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.083
|
0.277
|
-0.789
|
0.379
|
0.625
|
— |
1.145
|
-1.269
|
-8.633
|
8.041
|
— | — | — |