Hg_chrom5_TN10mRNA_8932
Organism: Heterodera glycines Gene Locus: chr5:268495-270735 Feature type: polypeptideProtein Sequence
Length: 416
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 1.174 | 0.874 | 0.912 | 1.683 | 0.925 | 0.887 | 0.841 | 1.335 | 1.299 | 1.348 | 1.838 | 1.135 | 0.832 | 0.687 | 0.618 | 0.788 | 0.874 | 0.37 | 0.636 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8397
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
mitochondria
|
— |
33-57
|
0.995
|
— | — |
1-26
|
0.876
|
0.893
|
0.000
|
0.000
|
0.475
|
0.230
|
0.011
|
0.676
|
0.197
|
0.201
|
0.189
|
0.004
|
0.220
|
0.366
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009075
|
1.000
|
1.000
|
Hsc_gene_14445.t1
|
Hsc_gene_14445.t1
|
— | — |
WP_067658468.1 nucleoside hydrolase [Ferrimonas marina];SHG94335.1 Inosine-uridine nucleoside N-ribohydrolase [Ferrimonas marina]
|
OUM67441
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016799
|
— |
IPR001910+52-359+|IPR036452+36-348_47-348+|IPR052775+42-398+
|
— |
PF01156+52-359+Inosine-uridine_preferring_nucleoside_hydrolase
|
— |
PTHR46190+42-398+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
397-416
|
1.000
|
1-396
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.524
|
46248.160
|
5.172
|
-7.500
|
28.846
|
8.413
|
46.635
|
53.365
|
13.942
|
14.904
|
46.875
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
562.173
|
1.535
|
51.311
|
915.749
|
110.012
|
9.260
|
3.047
|
7.470
|
1605.939
|
843.157
|
1170.064
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.845
|
9.087
|
4.269
|
-3.091
|
-3.555
|
-1.595
|
— | — | — | — | — | — | — |