Hg_chrom5_TN10mRNA_8934
Organism: Heterodera glycines Gene Locus: chr5:274506-275521 Feature type: polypeptideProtein Sequence
Length: 158
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.03 | 1.766 | 0.69 | 0.436 | 1.582 | 0.974 | 1.206 | 1.899 | 1.406 | 0.684 | 0.863 | 2.234 | 1.582 | 0.487 | 1.162 | 0.995 | 0.208 | 0.575 | 1.461 | 0.745 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8399
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.893
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm|extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.500
|
0.143
|
0.145
|
0.546
|
0.072
|
0.200
|
0.176
|
0.577
|
0.164
|
0.764
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009077
|
1.000
|
1.000
|
Hsc_gene_14447.t1
|
Hsc_gene_14447.t1;Hsc_gene_14447.t2
|
— | — |
KAF7637515.1 DUF4440 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR027843+44-145+|IPR032710+34-152+
|
— |
PF14534+44-145+Domain_of_unknown_function_(DUF4440)
|
— |
PTHR31664+41-154+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-21
|
1.000
|
22-158
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.738
|
17782.910
|
6.490
|
0.000
|
28.481
|
13.924
|
48.101
|
51.899
|
15.190
|
13.291
|
46.203
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
265.527
|
52.785
|
773.093
|
478.215
|
121.082
|
51.227
|
21.287
|
389.254
|
129.592
|
356.882
|
259.472
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.644
|
3.041
|
-0.586
|
-2.016
|
-1.225
|
-1.256
|
2.826
|
-4.052
|
— | — | — | — | — |
No JSON data available for plots.