Hg_chrom5_TN10mRNA_8936
Organism: Heterodera glycines Gene Locus: chr5:281299-283007 Feature type: polypeptideProtein Sequence
Length: 301
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.85 | 1.159 | 0.242 | 1.031 | 0.221 | 0.596 | 0.475 | 0.332 | 1.993 | 1.706 | 0.654 | 2.345 | 2.676 | 0.767 | 0.542 | 1.614 | 0.708 | 1.107 | 1.789 | 1.075 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8401
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.095
|
0.092
|
0.017
|
0.113
|
0.266
|
0.237
|
0.311
|
0.044
|
0.740
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009079
|
1.000
|
1.000
|
Hsc_gene_14449.t1
|
Hsc_gene_14449.t1;Hsc_gene_14449.t2
|
— | — |
KAI3412018.1 Formin Homology 2 Domain containing [Globodera pallida]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
— |
IPR000276+18-283+|IPR017452+24-269+|IPR019424+20-282+|IPR047130+14-295+
|
SM01381+18-283+
|
PF10320+20-282+Serpentine_type_7TM_GPCR_chemoreceptor_Srsx
|
— |
PTHR23360+14-295+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-301
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.841
|
33887.520
|
9.631
|
14.000
|
10.299
|
16.279
|
33.223
|
66.777
|
7.641
|
2.658
|
47.508
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
34.422
|
265.041
|
11.833
|
16.652
|
15.159
|
7.401
|
5.881
|
27.124
|
1.028
|
18.918
|
11.251
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.729
|
-4.130
|
— | — | — | — | — |
-2.065
|
— |
3.916
|
— | — | — |
No JSON data available for plots.