Hg_chrom5_TN10mRNA_8937
Organism: Heterodera glycines Gene Locus: chr5:283871-285403 Feature type: polypeptideProtein Sequence
Length: 357
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.521 | 1.629 | 0.968 | 1.352 | 1.12 | 1.077 | 0.534 | 0.84 | 2.365 | 1.401 | 1.231 | 1.153 | 1.323 | 0.754 | 0.743 | 1.08 | 0.918 | 0.424 | 0.0 | 0.824 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8402
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
20-Not_Clustered
|
0.841
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_export_signal
|
cytoplasm
|
nucleus
|
KKIAIDVFYNGTRRRIN
|
— | — | — | — | — |
0.710
|
0.233
|
0.000
|
— |
0.411
|
0.174
|
0.015
|
0.690
|
0.155
|
0.417
|
0.179
|
0.023
|
0.118
|
0.145
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009080
|
1.000
|
1.000
|
Hsc_gene_14451.t1
|
Hsc_gene_14451.t1
|
— | — |
XP_022667540.1 E3 ubiquitin-protein ligase NEURL1B-like [Varroa destructor];XP_022699535.1 E3 ubiquitin-protein ligase NEURL1B-like [Varroa jacobsoni]
|
No
|
-0.340
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0061630
|
GO:0003674_0.844|GO:0003824_0.707|GO:0140096_0.701|GO:0016740_0.684|GO:0016746_0.667|GO:0016755_0.667|GO:0019787_0.667|GO:0004842_0.663|GO:0008150_0.607|GO:0005575_0.559|GO:0009987_0.558|GO:0110165_0.552|GO:0065007_0.529|GO:0050789_0.513|GO:0050794_0.502
|
IPR001841+305-344+|IPR013083+282-356+|IPR045194+288-355+
|
— |
PF13920+303-350+Zinc_finger,_C3HC4_type_(RING_finger)
|
— |
PTHR22996+288-355+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
254-300
|
2.000
|
1-253;301-357
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
40405.630
|
6.952
|
2.000
|
25.490
|
9.244
|
49.860
|
50.140
|
13.445
|
12.045
|
45.098
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
76.095
|
33.161
|
17.675
|
65.071
|
6.011
|
1.271
|
1.819
|
3.040
|
353.610
|
19.691
|
162.799
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.134
|
0.837
|
1.989
|
-3.478
|
-2.228
|
— | — | — | — | — | — | — | — |