Hg_chrom5_TN10mRNA_8938
Organism: Heterodera glycines Gene Locus: chr5:287894-289320 Feature type: polypeptideProtein Sequence
Length: 229
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.762 | 1.828 | 0.635 | 1.205 | 0.146 | 1.008 | 0.78 | 0.655 | 1.456 | 1.18 | 1.257 | 0.771 | 1.334 | 0.588 | 0.089 | 1.31 | 1.861 | 0.926 | 0.0 | 1.798 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8403
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-19
|
0.989
|
1.000
|
0.000
|
0.000
|
0.360
|
0.126
|
0.017
|
0.396
|
0.409
|
0.067
|
0.187
|
0.028
|
0.335
|
0.845
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003989
|
1.000
|
2.000
|
Hsc_gene_11104.t1;Hsc_gene_14452.t1
|
Hsc_gene_14457.t1
|
— |
B0Y9M8.1 Probable pectate lyase E [Aspergillus fumigatus A1163]
|
ADW77536.1 pectate lyase [Heterodera glycines]
|
TFL03349
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576|GO:0030570
|
GO:0008150_0.938|GO:0003674_0.847|GO:0008152_0.776|GO:0044238_0.757|GO:0043170_0.740|GO:0003824_0.721|GO:0009056_0.698|GO:0009057_0.685|GO:0005975_0.682|GO:0005976_0.681|GO:0000272_0.670|GO:0010393_0.670|GO:0016052_0.670|GO:0045488_0.670|GO:0045490_0.670|GO:0016829_0.656|GO:0016835_0.650|GO:0016837_0.650|GO:0030570_0.650
|
IPR004898+23-143+|IPR011050+31-143+|IPR012334+22-170+
|
— |
PF03211+23-143+Pectate_lyase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-229
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.888
|
24936.600
|
9.247
|
11.500
|
14.410
|
12.227
|
46.725
|
53.275
|
10.044
|
4.367
|
57.642
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
130.704
|
1.475
|
2.690
|
0.613
|
1.327
|
0.502
|
2.233
|
0.827
|
680.784
|
57.617
|
324.688
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — |
-10.002
|
— | — | — |