Hg_chrom5_TN10mRNA_8947
Organism: Heterodera glycines Gene Locus: chr5:317499-320463 Feature type: polypeptideProtein Sequence
Length: 459
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.633 | 1.52 | 0.594 | 0.526 | 1.162 | 1.173 | 0.415 | 1.634 | 1.452 | 1.384 | 1.089 | 2.05 | 1.876 | 0.67 | 0.978 | 1.12 | 0.821 | 0.792 | 0.335 | 1.153 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8412
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKGAIQQEKENTKRTQK
|
47-70
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.591
|
0.146
|
0.027
|
0.488
|
0.047
|
0.023
|
0.059
|
0.020
|
0.122
|
0.099
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000172
|
1.000
|
11.000
|
Hsc_gene_13323.t1;Hsc_gene_14463.t1;Hsc_gene_14463.t2;Hsc_gene_14463.t3;Hsc_gene_1471.t1;Hsc_gene_1604.t1;Hsc_gene_6083.t1;Hsc_gene_8920.t1;Hsc_gene_8920.t2;Hsc_gene_8926.t1;Hsc_gene_8926.t2
|
Hsc_gene_14463.t2;Hsc_gene_14463.t3
|
— |
O17683.1 Nuclear hormone receptor family member nhr-167 [Caenorhabditis elegans]
|
KAI1718737.1 zinc finger, c4 type (two domains) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
— |
IPR000536+220-450_249-421_253-427+|IPR001628+66-97+|IPR013088+33-110+|IPR035500+246-451_250-433+|IPR050274+70-431+
|
SM00430+249-421+
|
PF00104+253-427+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+66-97+Zinc_finger,_C4_type_(two_domains)
|
— |
PTHR24083+70-431+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-33
|
1.000
|
34-459
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.770
|
53202.360
|
8.988
|
15.500
|
25.490
|
14.379
|
49.455
|
50.545
|
15.251
|
10.240
|
41.830
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
200.851
|
34.649
|
154.389
|
56.588
|
15.982
|
16.193
|
9.548
|
26.372
|
424.991
|
442.335
|
434.902
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.929
|
0.571
|
-1.341
|
-1.861
|
— | — | — |
-1.321
|
— | — |
-4.371
|
— | — |
No JSON data available for plots.