Hg_chrom5_TN10mRNA_8952
Organism: Heterodera glycines Gene Locus: chr5:356143-357813 Feature type: polypeptideProtein Sequence
Length: 153
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.14 | 0.76 | 1.188 | 0.0 | 1.198 | 1.676 | 0.389 | 1.307 | 0.871 | 1.59 | 0.594 | 1.922 | 1.452 | 0.88 | 1.2 | 0.747 | 0.536 | 0.792 | 2.514 | 1.538 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8417
|
— | — |
1.556
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
3.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.471
|
0.228
|
0.022
|
0.382
|
0.213
|
0.294
|
0.182
|
0.126
|
0.129
|
0.203
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002150
|
3.000
|
1.000
|
Hsc_gene_4691.t1
|
Hsc_gene_4691.t1
|
— |
Q9UKM7.2 Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase [Homo sapiens]
|
KHJ78413.1 glycosyl hydrolase family 47 [Oesophagostomum dentatum]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004571|GO:0005509|GO:0005975|GO:0016020
|
GO:0008150_0.858|GO:0005575_0.840|GO:0110165_0.839|GO:0005622_0.799|GO:0005737_0.765|GO:0016020_0.739|GO:0003674_0.736|GO:0043226_0.703|GO:0008152_0.702|GO:0043229_0.697|GO:0043227_0.684|GO:0044238_0.671|GO:0043231_0.668|GO:0043170_0.645|GO:0003824_0.639|GO:0071944_0.629|GO:0005886_0.623|GO:0019538_0.622|GO:0016787_0.580|GO:0009987_0.559|GO:0016798_0.555|GO:0004553_0.554|GO:0005773_0.554|GO:0004559_0.550|GO:0015923_0.550|GO:0012505_0.544|GO:1901135_0.509
|
IPR001382+6-150_50-74_113-133+|IPR012341+3-153+|IPR036026+6-151+|IPR050749+4-150+
|
— |
PF01532+6-150+Glycosyl_hydrolase_family_47
|
— |
PTHR11742+4-150+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-153
|
1nxc_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
17976.440
|
4.973
|
-4.000
|
26.144
|
16.340
|
44.444
|
55.556
|
12.418
|
13.725
|
41.176
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
red
|
39.887
|
4.763
|
3.808
|
1.768
|
3.610
|
3.639
|
20.162
|
17.107
|
4.626
|
150.464
|
87.962
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.567
|
— | — | — |
2.480
|
2.140
|
— | — | — | — | — | — |
No JSON data available for plots.