Hg_chrom5_TN10mRNA_8955
Organism: Heterodera glycines Gene Locus: chr5:366651-367890 Feature type: polypeptideProtein Sequence
Length: 190
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 0.612 | 0.957 | 1.089 | 0.789 | 0.945 | 0.627 | 0.0 | 1.17 | 0.996 | 1.276 | 1.238 | 0.439 | 1.215 | 1.611 | 1.353 | 0.863 | 1.196 | 1.215 | 0.619 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8420
|
— | — |
1.667
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
3.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.928
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRR
|
— | — |
46-102
|
0.965
|
— | — |
0.000
|
— | — |
0.210
|
0.481
|
0.103
|
0.712
|
0.020
|
0.012
|
0.080
|
0.064
|
0.363
|
0.417
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000187
|
10.000
|
1.000
|
Hsc_gene_4693.t1
|
— | — |
Q23551.3 Twitchin [Caenorhabditis elegans]
|
KAI3421286.1 IG-like protein, partial [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.891|GO:0110165_0.889|GO:0005622_0.754|GO:0008150_0.743|GO:0005737_0.671|GO:0003674_0.657|GO:0043226_0.646|GO:0043229_0.636|GO:0009987_0.620|GO:0005488_0.561|GO:0065007_0.547|GO:0050789_0.539|GO:0005515_0.517
|
IPR003961+15-43+|IPR007110+58-151+|IPR013098+68-152+|IPR013783+4-52_56-168+|IPR036116+14-60+|IPR036179+67-161+
|
— |
PF07679+68-152+Immunoglobulin_I-set_domain
|
G3DSA:2.60.40.10:FF:000031+57-154+Myosin-binding_protein_C,_slow_type
|
PTHR14340+15-160+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
149-190
|
1.000
|
1-148
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.723
|
20856.140
|
10.153
|
12.000
|
26.316
|
5.263
|
47.368
|
52.632
|
16.316
|
10.000
|
55.263
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
29.775
|
17.205
|
23.637
|
21.324
|
29.232
|
20.252
|
69.392
|
40.627
|
2.764
|
45.067
|
26.938
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.786
|
0.893
|
0.917
|
— | — | — | — | — |
No JSON data available for plots.